View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_high_14 (Length: 382)
Name: NF13896_high_14
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 15776544 - 15776186
Alignment:
| Q |
13 |
accacaatctttcaattatgtttgtcaatgactgataaaatgaaattacatagaaaaatattttgctttaatattttcttgcctctattttatgtatatt |
112 |
Q |
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| T |
15776544 |
accacaatctttcaattatgtttgtcaatgactgataaaatgaaattacatagaaaaatattttgctttaatattttcttgcctctattttatgtatatt |
15776445 |
T |
|
| Q |
113 |
atttgaccacaaattatgtatattatttcgtcacttcaattgatattaatgtacttaacatagcaaaacaacaattatttctgtaaaacataatccaaat |
212 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
15776444 |
atttgaccacaaattatgtatattatttcatcacctcaattgatattaatgtacttaacatagcaaaataacaattatttcggtaaaacataatccaaat |
15776345 |
T |
|
| Q |
213 |
aaattatcataatataacaatgattacgcgaatacatctagttgaaattacaaaagacatatttcatcaaaatacaatgcattaagtaggatagcaataa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15776344 |
aaattatcataatataacaatgattacgcgaatacatgtagttgaaattacaaaagacatatttcatcaaaatacaatgcattaagtaggatagcaataa |
15776245 |
T |
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| Q |
313 |
tcggtggaatctaccagtcgattaattgagttgcaacatgtaaatacaatgggtcccct |
371 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15776244 |
tctgtggaatctaccagtcgattaattgagttgcaacatgtaaatacaatgggtcccct |
15776186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 124 - 371
Target Start/End: Original strand, 13915031 - 13915278
Alignment:
| Q |
124 |
aattatgtatattatttcgtcacttcaattgatattaatgtacttaacatagcaaaacaacaattatttctgtaaaacataatccaaataaattatcata |
223 |
Q |
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| T |
13915031 |
aattatgtatattatttcgtcacctcaattgatattaatgtacttaacatagcaaaacaacaattatttctgtaaaacataatcaaaataaattatcata |
13915130 |
T |
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| Q |
224 |
atataacaatgattacgcgaatacatctagttgaaattacaaaagacatatttcatcaaaatacaatgcattaagtaggatagcaataatcggtggaatc |
323 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13915131 |
atataacaatgattacgcgaatacatgtagttgaaattacaaaagacatatttcatcaaaatacaatccattaagtaggatagcaataatcggtggaatc |
13915230 |
T |
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| Q |
324 |
taccagtcgattaattgagttgcaacatgtaaatacaatgggtcccct |
371 |
Q |
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| T |
13915231 |
taccagtcgattaattgagttgcaacatgtaaatacaatgggtcccct |
13915278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 29064244 - 29064373
Alignment:
| Q |
13 |
accacaatctttcaattatgtttgtcaatgactgataaaatgaaattacatagaaaaatattttgctttaatattttcttgcctctattttatgtatatt |
112 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29064244 |
accacaatctttcaattatgtttgtcaatgactcataaaattaaattacatagaaaaatattttgctttaatatttccttgcctctattttatgtatatt |
29064343 |
T |
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| Q |
113 |
atttgaccacaaattatgtatattatttcg |
142 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29064344 |
atttgaccacaaattatgtatattatttcg |
29064373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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