View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13896_high_17 (Length: 301)
Name: NF13896_high_17
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 41957140 - 41956867
Alignment:
| Q |
8 |
tgagatgaagattagcaaaaactgtttgttagctaaattttagaaagttggttagttttggaataattacatgcataacaagtaaagcctattgattgta |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41957140 |
tgagataaagattagcaaaaactgtttgtaagctaaattttagcaagttagttagttttggaataattacatgcataacaagtaaagcctattgattgta |
41957041 |
T |
|
| Q |
108 |
tataaatatgatgtaacaacaaaaattcattgctaatgaaacaagaggtttacaatcatatagttctctctctattctcaactatttctctctagaacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41957040 |
tataaatatgatgtaacaacaaaaattcatttctaatgaaacaagaggtttacaatcatatagttctctctctattctcaactatttctctctagaacaa |
41956941 |
T |
|
| Q |
208 |
ttacttgcaatgcaagtaattggtgatgcgctaacaaaaaggaccggagggagtctatgtaattaaacaatgac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41956940 |
ttacttgcaatgcaagtaattggtgatgcgctaacaaaaaggaccggagggagtctatgtaattaaacaatgac |
41956867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University