View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13896_high_2 (Length: 742)

Name: NF13896_high_2
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13896_high_2
NF13896_high_2
[»] chr6 (10 HSPs)
chr6 (8-725)||(34088620-34089345)
chr6 (8-291)||(34104002-34104284)
chr6 (131-400)||(34145390-34145663)
chr6 (131-400)||(34158006-34158279)
chr6 (328-558)||(34103783-34104011)
chr6 (131-474)||(34118152-34118509)
chr6 (159-291)||(34100338-34100470)
chr6 (609-724)||(34118052-34118161)
chr6 (676-725)||(34103545-34103594)
chr6 (594-645)||(34103603-34103654)
[»] scaffold0620 (1 HSPs)
scaffold0620 (8-725)||(2073-2789)
[»] chr3 (4 HSPs)
chr3 (505-558)||(43347313-43347366)
chr3 (516-557)||(791903-791944)
chr3 (516-557)||(10839368-10839409)
chr3 (515-556)||(19649359-19649400)
[»] chr4 (5 HSPs)
chr4 (515-557)||(12792218-12792260)
chr4 (499-560)||(5780736-5780797)
chr4 (524-557)||(10094389-10094422)
chr4 (516-558)||(17888538-17888580)
chr4 (524-558)||(46474092-46474126)
[»] chr1 (2 HSPs)
chr1 (516-558)||(10907636-10907678)
chr1 (516-558)||(38859949-38859991)
[»] chr8 (3 HSPs)
chr8 (504-560)||(19334879-19334935)
chr8 (517-572)||(43282840-43282895)
chr8 (504-557)||(16591351-16591404)
[»] chr5 (6 HSPs)
chr5 (516-556)||(11856395-11856435)
chr5 (518-558)||(27916238-27916278)
chr5 (504-559)||(3341096-3341151)
chr5 (526-561)||(6174841-6174876)
chr5 (515-558)||(36769061-36769104)
chr5 (515-557)||(29491401-29491443)
[»] chr7 (1 HSPs)
chr7 (516-558)||(41853209-41853251)


Alignment Details
Target: chr6 (Bit Score: 524; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 725
Target Start/End: Complemental strand, 34089345 - 34088620
Alignment:
Q  8 gacatcatcaattacaagttagacacaataagttacatgaacaccgggtatcgataaatatttaagaaaatgacatgaaccc------tcaacacacagg 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||    
T  34089345 gacaccatcaattacaagttagacacaataagttacatgaacaccgggtatcgataaatatttaagaaaatgacatgaacccgaaccctcaacacacagg 34089246  T
Q  102 caccgtattgcattcgtctaggactaaatttgaaaacaaaagattcgttgaattgatataacaaaaaatcccaaattcaaaaagtttgtataaaccctaa 201  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34089245 cgccgtattgcattcgtccaggactaaatttgaaaacaaaagattcgttgaattgatataacaaaaaatcccaaatttaaaaagtttgtataaaccctaa 34089146  T
Q  202 ccctaaagaaagtgcattaatcacttaacagattgaaaggcaacaagagacaaccattaacaactagaattgaaaaagataaaagaagaagnnnnnnnnn 301  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||             
T  34089145 ccctaaagaaagtgcattaatcacttaacagattgaaaggtaacaagagacatccattaacaactagaattaaaaaagataaaagaagaagatgattttt 34089046  T
Q  302 nnn-ccacaaatattattaataataagaaaagaagaagatgaatgaaattaccttgatatttgactattggagaaattaagaaaacttatgaatgaaatg 400  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  34089045 ttttccacaaatattattaataataagaaaagaagaagatgaatgaaattaccttgatatatgactatcggagaaattaagaaaacttatgaatgaaatg 34088946  T
Q  401 aaaattgtgaagccctgtagagacaggtaagaatgtatagtaataaataagagtataagttttttgggctgaatcaggaacggttctaaggcccccagcg 500  Q
    ||||||||||||  ||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  34088945 aaaattgtgaagaactgtagagataggtaagaatatatggtaataaataagagtataagttttgtgggctgaatcaggagcggttctaaggaccccagcg 34088846  T
Q  501 agactgggcagttttccgggcttcggcccaaattttttgtaatttcttatgtaaattcttcgaaatttattaatgg-nnnnnnnnntcatcttctcctag 599  Q
    || || ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||          ||||||||||||||    
T  34088845 agcctaggctgttgtccgggctccggcccaaattttttgtaatttcttatgtaaattcttctaaatttattaatggaaaaaaaaaatcatcttctcctag 34088746  T
Q  600 ctcggccactgggctgaatgatatttgaaaacccaagcccaagcctaagcccgagcctcctttcttctttctttgactgacatcataaccgggggaagtt 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  34088745 ctcggccactgggctgaatgatatttgaaaacccaagcccaagcctaagcccgagcctcctttcttttttctttgactgacatcataaccgagggaagtt 34088646  T
Q  700 ctagaaaccgaaaaaaggacgtaaat 725  Q
    ||||||||||||||||||||||||||    
T  34088645 ctagaaaccgaaaaaaggacgtaaat 34088620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 34104284 - 34104002
Alignment:
Q  8 gacatcatcaattacaagttagacacaataagttacatgaacaccgggtatcgataaatatttaagaaaatgacatgaaccctcaacacacaggcaccgt 107  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||| ||||||| || | |||||||||||||||||||| ||||||||||||| |||| |    
T  34104284 gacaccatcaattacaagttagacacaatgagttacaggaacacctggtatcggtagagatttaagaaaatgacatgaatcctcaacacacagacaccat 34104185  T
Q  108 attgcattcgtctaggactaaatttgaaaacaaaagattcgttgaattgatataacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaa 207  Q
    ||||||||| |||||||| |||||||||||||||||| || ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  34104184 attgcattcatctaggaccaaatttgaaaacaaaagactcattgaattgatagaacagaaaatcccaaattcaaaacgtttgtataaaccctaaccctaa 34104085  T
Q  208 agaaagtgcattaatcacttaacagattgaaaggcaacaagagacaaccattaacaactagaattgaaaaagataaaagaagaa 291  Q
    | || |||||||||||||| |||||| |||||| ||||||||||||   ||| |||||||||||||||||||| ||||||||||    
T  34104084 a-aaggtgcattaatcactgaacagaatgaaagacaacaagagacatatattcacaactagaattgaaaaagaaaaaagaagaa 34104002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 131 - 400
Target Start/End: Complemental strand, 34145663 - 34145390
Alignment:
Q  131 ttgaaaacaaaagattcgttgaattgatataacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaaagaaagtgcattaatcacttaac 230  Q
    |||||||||||||| |||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||| ||| |||    
T  34145663 ttgaaaacaaaagactcgttgaattgacagaacagaaaatcccaaattcaaaaggtttgtataaaccctaaccctaaagaaattgtattaatgactgaac 34145564  T
Q  231 agattgaaaggcaacaagagacaaccattaacaactagaattgaaaaagataaaagaagaagnnnnnnnnnnnnccacaa---atattattaataataag 327  Q
    |||||| ||| || | ||||||| |||||||||||||||||||||||||| |||||||||||             |||||   |||||||||||||| |     
T  34145563 agattggaagacagccagagacatccattaacaactagaattgaaaaagaaaaaagaagaagatgatatgtttttcacaaaggatattattaataatgat 34145464  T
Q  328 aa-aagaagaagatgaatgaaattaccttgatatttgactattggagaaattaagaaaacttatgaatgaaatg 400  Q
    || |||||||||| |||||||| ||||||||||| ||| |||  ||||||||||||||  ||||||||||||||    
T  34145463 aagaagaagaagaagaatgaaaataccttgatatatgaatatccgagaaattaagaaagattatgaatgaaatg 34145390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 131 - 400
Target Start/End: Complemental strand, 34158279 - 34158006
Alignment:
Q  131 ttgaaaacaaaagattcgttgaattgatataacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaaagaaagtgcattaatcacttaac 230  Q
    |||||||||||||| |||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||| ||| |||    
T  34158279 ttgaaaacaaaagactcgttgaattgacagaacagaaaatcccaaattcaaaaggtttgtataaaccctaaccctaaagaaattgtattaatgactgaac 34158180  T
Q  231 agattgaaaggcaacaagagacaaccattaacaactagaattgaaaaagataaaagaagaagnnnnnnnnnnnnccacaa---atattattaataataag 327  Q
    |||||| ||| || | ||||||| |||||||||||||||||||||||||| |||||||||||             |||||   |||||||||||||| |     
T  34158179 agattggaagacagccagagacatccattaacaactagaattgaaaaagaaaaaagaagaagatgatatgtttttcacaaaggatattattaataatgat 34158080  T
Q  328 aa-aagaagaagatgaatgaaattaccttgatatttgactattggagaaattaagaaaacttatgaatgaaatg 400  Q
    || |||||||||| |||||||| ||||||||||| ||| |||  ||||||||||||||  ||||||||||||||    
T  34158079 aagaagaagaagaagaatgaaaataccttgatatatgaatatccgagaaattaagaaagattatgaatgaaatg 34158006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 328 - 558
Target Start/End: Complemental strand, 34104011 - 34103783
Alignment:
Q  328 aaaagaagaagatgaatgaaattaccttgatatttgactattggagaaattaagaaaacttatgaatgaaatgaaaattgtgaagccctgtagagacagg 427  Q
    |||||||||| |||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  34104011 aaaagaagaaaatgaatgaaattaccttgatatatgaatttcggagaaattaagaaaacttatgaatgaaatgaaaactgtgaagccctgtagagacaag 34103912  T
Q  428 taagaatgtatagtaataaataagagtataagttttttgggctgaatcaggaacggttctaaggcccccagcgagactgggcagttttccgggcttcggc 527  Q
    ||||||| |||||||||||||  ||||||||| | | |||| ||||| |||   ||||||||||||   |||||| || || |||| ||||| ||  | |    
T  34103911 taagaatatatagtaataaatgtgagtataagctgtgtggggtgaattaggggaggttctaaggcct--agcgagcctaggtagttgtccggactctgac 34103814  T
Q  528 ccaaattttttgtaatttcttatgtaaattc 558  Q
    |||  ||||||||||||| ||||||||||||    
T  34103813 ccacgttttttgtaatttattatgtaaattc 34103783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 131 - 474
Target Start/End: Complemental strand, 34118509 - 34118152
Alignment:
Q  131 ttgaaaacaaaagattcgttgaattgatataacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaaagaaagtgcattaatcacttaac 230  Q
    |||||||||||||| || ||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||| ||| |||    
T  34118509 ttgaaaacaaaagactccttgaattgacagaacagaaaatcccaaattcaaaaggtttgtataaaccctaaccctaaagaaattgtattaatgactgaac 34118410  T
Q  231 agattgaaaggcaacaagagacaaccattaacaactagaattgaaaaagataaaagaagaagnnnnnnnnnnnnccacaa---atattattaata---at 324  Q
    |||||| ||| || | ||||||| |||||||||||||||||||||||||| |||||||||||             |||||   |||||| |||||   ||    
T  34118409 agattggaagacagccagagacatccattaacaactagaattgaaaaagaaaaaagaagaagatgatatgtttttcacaaacgatattaataataatgat 34118310  T
Q  325 aagaa-aagaagaag-------atgaatgaaattaccttgatatttgactattggagaaattaagaaaacttatgaatgaaatgaaaattgtgaagccct 416  Q
    ||||| |||||||||       |||||||||| ||||||||||| ||| |||   |||||||||||||  |||||||||||||| ||| |||||||||||    
T  34118309 aagaagaagaagaagaagaagaatgaatgaaaataccttgatatatgaatatcctagaaattaagaaagattatgaatgaaatggaaactgtgaagccct 34118210  T
Q  417 gtagagacaggtaagaatgtatagtaataaataagagtataagttttttgggctgaat 474  Q
      ||| ||| ||||| || ||||||| ||| | |||||||||| | | ||||||||||    
T  34118209 agagaaacaagtaagtatatatagtagtaactgagagtataagctatgtgggctgaat 34118152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 34100470 - 34100338
Alignment:
Q  159 ataacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaaagaaagtgcattaatcacttaacagattgaaaggcaacaagagacaaccat 258  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||  || ||||||||  ||||||||||| |  |||    
T  34100470 ataacagaaaatcccaaattcaaaaaatttgtataaaccctaacacgaaagaaagtgtattaatcacgaaatagattgaagtgcaacaagagatattcat 34100371  T
Q  259 taacaactagaattgaaaaagataaaagaagaa 291  Q
    ||||| ||||||||||||| || ||||||||||    
T  34100370 taacagctagaattgaaaaggaaaaaagaagaa 34100338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 609 - 724
Target Start/End: Complemental strand, 34118161 - 34118052
Alignment:
Q  609 tgggctgaatgatatttgaaaacccaagcccaagcctaagcccgagcctcctttcttctttctttgactgacatcataaccgggggaagttctagaaacc 708  Q
    |||||||||||||| ||||||||||||||||||||||      ||||||||||||||||||||||||||| | |||||||||| |||| ||| |||||||    
T  34118161 tgggctgaatgataattgaaaacccaagcccaagcct------gagcctcctttcttctttctttgactggcttcataaccggaggaaattccagaaacc 34118068  T
Q  709 gaaaaaaggacgtaaa 724  Q
    ||||||  ||||||||    
T  34118067 gaaaaactgacgtaaa 34118052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 676 - 725
Target Start/End: Complemental strand, 34103594 - 34103545
Alignment:
Q  676 ctgacatcataaccgggggaagttctagaaaccgaaaaaaggacgtaaat 725  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  34103594 ctgacatcataaccgggggaagttccagaaaccaaaaaaaggacgtaaat 34103545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 594 - 645
Target Start/End: Complemental strand, 34103654 - 34103603
Alignment:
Q  594 tcctagctcggccactgggctgaatgatatttgaaaacccaagcccaagcct 645  Q
    |||| |||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  34103654 tcctggctccgccactgggcttaatgatatttgaagacccaagcccaagcct 34103603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 725
Target Start/End: Complemental strand, 2789 - 2073
Alignment:
Q  8 gacatcatcaattacaagttagacacaataagttacatgaacaccgggtatcgataaatatttaagaaaatgacatgaaccctcaacacacaggcaccgt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||| ||||| |    
T  2789 gacaacatcaattacaagttagacacaataagttacatgaacaccgattatcggtaaatatttaagaaaatgacatgaaccctcaacacacaagcaccat 2690  T
Q  108 attgcattcgtctaggactaaatttgaaaacaaaagattcgttgaattgatataacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaa 207  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2689 attgcattcgtccaagactaaatttgaaaacaaaatattcgttgaattgatataacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaa 2590  T
Q  208 agaaagtgcattaatcacttaacagattgaaaggcaacaagagacaaccattaacaactagaattgaaaaagataaaagaagaagnnnnnnnnnnnncca 307  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |              |    
T  2589 agaaagtgcattaatcacttaacagattgaaaggtaacaaaagacatccattaacaactagaattgaaaaagataaaagaagatgattttttttaa---a 2493  T
Q  308 caaatattattaataataagaa---aagaagaagatgaatgaaattaccttgatatttgactattggagaaattaagaaaacttatgaatgaaatgaaaa 404  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||||    
T  2492 caaatattagtaataataagaaaagaagaagaagatgaatgaaattaccttgatatatgactatcggagaaattaagaaaactaatgaatcaaatgaaaa 2393  T
Q  405 ttgtgaagccctgtagagacaggtaagaatgtatagtaataaataagagtataagttttttgggctgaatcaggaacggttctaaggcccccagcgagac 504  Q
    ||||||||  ||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||| |    
T  2392 ttgtgaagaactgtagagataggtaagaatatatggtaataaataagagtataagttttgtgggctgaatcaggggcggttctaaggcccccagcgagcc 2293  T
Q  505 tgggcagttttccgggcttcggcccaaattttttgtaatttcttatgtaaattcttcgaaatttattaatggnnnnnnnnntcatcttctcctagctcgg 604  Q
    ||| ||||| ||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||||||         |||||||||| | ||||||    
T  2292 tggacagttgtccagactccgacccaaattttttgtaatttcttatgtaaattcttctaaatttattaatgg-aaaaaaaatcatcttctcttggctcgg 2194  T
Q  605 ccactgggctgaatgatatttgaaaacccaagcccaagcctaagcccgagcctcctttcttctttctttgactgacatcataaccgggggaagttctaga 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2193 ccactgggctgaatgatatttgaaaacccaagcccaagcctaagcccaagcctcctttcttctttctttgactgacatcataactgggggaagttctaga 2094  T
Q  705 aaccgaaaaaaggacgtaaat 725  Q
    |||||||||||||||||||||    
T  2093 aaccgaaaaaaggacgtaaat 2073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 558
Target Start/End: Original strand, 43347313 - 43347366
Alignment:
Q  505 tgggcagttttccgggcttcggcccaaattttttgtaatttcttatgtaaattc 558  Q
    ||||||||| |||||||| || ||||||||||||| ||||||||||||||||||    
T  43347313 tgggcagttgtccgggctccgacccaaattttttgcaatttcttatgtaaattc 43347366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 557
Target Start/End: Complemental strand, 791944 - 791903
Alignment:
Q  516 ccgggcttcggcccaaattttttgtaatttcttatgtaaatt 557  Q
    |||||||| ||||||| ||||||| |||||||||||||||||    
T  791944 ccgggctttggcccaatttttttgcaatttcttatgtaaatt 791903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 557
Target Start/End: Original strand, 10839368 - 10839409
Alignment:
Q  516 ccgggcttcggcccaaattttttgtaatttcttatgtaaatt 557  Q
    ||||||| || ||||||||||||| |||||||||||||||||    
T  10839368 ccgggctccgacccaaattttttgcaatttcttatgtaaatt 10839409  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 19649359 - 19649400
Alignment:
Q  515 tccgggcttcggcccaaattttttgtaatttcttatgtaaat 556  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  19649359 tccgggctccggcacaacttttttgtaatttcttatgtaaat 19649400  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 557
Target Start/End: Original strand, 12792218 - 12792260
Alignment:
Q  515 tccgggcttcggcccaaattttttgtaatttcttatgtaaatt 557  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  12792218 tccgggctttggcccaatttttttgtaatttcttatgtaaatt 12792260  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 560
Target Start/End: Original strand, 5780736 - 5780797
Alignment:
Q  499 cgagactgggcagttttccgggcttcggcccaaattttttgtaatttcttatgtaaattctt 560  Q
    |||| ||||||||||  |||| ||||||||||| ||||||| |||||||||||||| |||||    
T  5780736 cgagtctgggcagttgcccggacttcggcccaatttttttgcaatttcttatgtaatttctt 5780797  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 557
Target Start/End: Original strand, 10094389 - 10094422
Alignment:
Q  524 cggcccaaattttttgtaatttcttatgtaaatt 557  Q
    ||||||||||||||||||||||||||||||||||    
T  10094389 cggcccaaattttttgtaatttcttatgtaaatt 10094422  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 17888538 - 17888580
Alignment:
Q  516 ccgggcttcggcccaaattttttgtaatttcttatgtaaattc 558  Q
    ||||||| |||||||||||||||  ||||||||||||||||||    
T  17888538 ccgggctccggcccaaatttttttcaatttcttatgtaaattc 17888580  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 558
Target Start/End: Complemental strand, 46474126 - 46474092
Alignment:
Q  524 cggcccaaattttttgtaatttcttatgtaaattc 558  Q
    |||||||||||||||| ||||||||||||||||||    
T  46474126 cggcccaaattttttgcaatttcttatgtaaattc 46474092  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 10907636 - 10907678
Alignment:
Q  516 ccgggcttcggcccaaattttttgtaatttcttatgtaaattc 558  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  10907636 ccgggctccggcccaaattttttgcaatttcttatgtaaattc 10907678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 38859991 - 38859949
Alignment:
Q  516 ccgggcttcggcccaaattttttgtaatttcttatgtaaattc 558  Q
    ||||||| |||||||||||||||  ||||||||||||||||||    
T  38859991 ccgggctccggcccaaatttttttcaatttcttatgtaaattc 38859949  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 560
Target Start/End: Complemental strand, 19334935 - 19334879
Alignment:
Q  504 ctgggcagttttccgggcttcggcccaaattttttgtaatttcttatgtaaattctt 560  Q
    |||||||||| |||||  | |||||||||||||||| |||||||||| |||||||||    
T  19334935 ctgggcagttatccggattccggcccaaattttttgcaatttcttatataaattctt 19334879  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 43282840 - 43282895
Alignment:
Q  517 cgggcttcggcccaaattttttgtaatttcttatgtaaattcttcgaaatttatta 572  Q
    |||| |||||| ||||||||||  |||||||||||||||||||||  |||||||||    
T  43282840 cggggttcggctcaaattttttacaatttcttatgtaaattcttctgaatttatta 43282895  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 557
Target Start/End: Original strand, 16591351 - 16591404
Alignment:
Q  504 ctgggcagttttccgggcttcggcccaaattttttgtaatttcttatgtaaatt 557  Q
    ||||||||||  ||||| | ||||| |||||||||| |||||||||||||||||    
T  16591351 ctgggcagttgcccgggttccggcctaaattttttgcaatttcttatgtaaatt 16591404  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 11856435 - 11856395
Alignment:
Q  516 ccgggcttcggcccaaattttttgtaatttcttatgtaaat 556  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  11856435 ccgggcttcggcccaagttttctgtaatttcttatgtaaat 11856395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 558
Target Start/End: Complemental strand, 27916278 - 27916238
Alignment:
Q  518 gggcttcggcccaaattttttgtaatttcttatgtaaattc 558  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  27916278 gggcttcggcctaaattttttgcaatttcttatgtaaattc 27916238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 559
Target Start/End: Original strand, 3341096 - 3341151
Alignment:
Q  504 ctgggcagttttccgggcttcggcccaaattttttgtaatttcttatgtaaattct 559  Q
    |||| ||||| ||| ||||  ||||||||||||||| |||||||||||||||||||    
T  3341096 ctggacagttatccaggctctggcccaaattttttgcaatttcttatgtaaattct 3341151  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 561
Target Start/End: Complemental strand, 6174876 - 6174841
Alignment:
Q  526 gcccaaattttttgtaatttcttatgtaaattcttc 561  Q
    |||||||||||||||||||||||| |||||||||||    
T  6174876 gcccaaattttttgtaatttcttacgtaaattcttc 6174841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 558
Target Start/End: Original strand, 36769061 - 36769104
Alignment:
Q  515 tccgggcttcggcccaaattttttgtaatttcttatgtaaattc 558  Q
    ||||| || |||||||||||||||| ||||||||||||||||||    
T  36769061 tccggactccggcccaaattttttgcaatttcttatgtaaattc 36769104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 557
Target Start/End: Original strand, 29491401 - 29491443
Alignment:
Q  515 tccgggcttcggcccaaattttttgtaatttcttatgtaaatt 557  Q
    |||||||||| |||||||| ||||| |||||||||||||||||    
T  29491401 tccgggcttcagcccaaatcttttgcaatttcttatgtaaatt 29491443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 41853251 - 41853209
Alignment:
Q  516 ccgggcttcggcccaaattttttgtaatttcttatgtaaattc 558  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  41853251 ccgggctccggcccaaattttttgcaatttcttatttaaattc 41853209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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