View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13896_high_21 (Length: 228)
Name: NF13896_high_21
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 8554903 - 8554706
Alignment:
| Q |
19 |
atctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaacaactta----actattatcataagatatcacatcacatcacaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8554903 |
atctggatgttgctcccatggtctccagacattatgcaatggtgagtacctaaaacaacttacttaactattatcataagatatcacatcacatcacaaa |
8554804 |
T |
|
| Q |
115 |
tagtcccctacatcaaagtcttcaacattatagtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcct |
212 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8554803 |
tagtcccctacatcaaagtctgcaaaattatagtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcct |
8554706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 8559425 - 8559349
Alignment:
| Q |
19 |
atctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaacaacttaactattatcataagat |
96 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| | | | |||||||||||||| |
|
|
| T |
8559425 |
atctggatgctgttcccatggtctccggacattatgcaatggtgagtacctgaaacaccat-agtattatcataagat |
8559349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 8559263 - 8559199
Alignment:
| Q |
146 |
agtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttc |
210 |
Q |
| |
|
||||||| |||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8559263 |
agtttcatcttactatttaacgataggtttaacgaaactcacttgattagccaatgaaattcttc |
8559199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 53740330 - 53740281
Alignment:
| Q |
23 |
ggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaa |
72 |
Q |
| |
|
||||| || ||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
53740330 |
ggatgctgttcccaaggtcgccggacattatgcaatggtgagtacctaaa |
53740281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 53739171 - 53739139
Alignment:
| Q |
180 |
aaactcacttgattagccaatgaaattcttcct |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
53739171 |
aaactcacttgattagccaatgaaactcttcct |
53739139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University