View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_high_6 (Length: 543)
Name: NF13896_high_6
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 37672425 - 37672827
Alignment:
| Q |
1 |
cgttatgctttcaaagatcccatattctcttccacacctctcttgtgctctttttagtttattagtctttaagctgacacgtggataatcacacaccctg |
100 |
Q |
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| T |
37672425 |
cgttatgctttcaaagatcccatattctcttccacacctctcctgtgctgtttttagtttattagtctttatgctgacacgtggataatcacacaccctg |
37672524 |
T |
|
| Q |
101 |
tatatatcttttgccac--taataataatataatatcacagattcaataaccctgcaaatccagacaatttaggcaaaaagtgccatatctattttgtat |
198 |
Q |
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| T |
37672525 |
tatatatcttttgccacactaataataatacaatatcacagattcaataaccctgcaaatccagacaatttaggcaaaaagtaccatatctattttgtat |
37672624 |
T |
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| Q |
199 |
tagaagtagcgtatgggacttgtgcttagtaggaatgctagaaaatcaactcatatgataattatttataacatatagtacaatattgccttnnnnnnnn |
298 |
Q |
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| T |
37672625 |
tagaagtagcgtatgggacttgtgcttagtaggaatgctagaaaatcaactcatatgataattatttataacatatagtacaatattgcct----aaaaa |
37672720 |
T |
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| Q |
299 |
nnnnttaatggtacaatatgattacgaaaagtcaataaaatcatataaattggacatttcaatggtgaaattagcaaaattctaaaataatctcatgaat |
398 |
Q |
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| T |
37672721 |
aaaattaatggtacaatatgattacgaaaagtcaataaaatcatataaattggacatttcaatggtgaaattagcaaaattctaaaataatcacatgaat |
37672820 |
T |
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| Q |
399 |
tgaaaat |
405 |
Q |
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| T |
37672821 |
tgaaaat |
37672827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 400 - 528
Target Start/End: Original strand, 37672854 - 37672985
Alignment:
| Q |
400 |
gaaaatatttagaaactataatgaataattttaaatgattaatataccaaacaattttaaatttaaatgattatttacttaaactataagcaacgtcacg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37672854 |
gaaaatatttagaaactataatgaataattttaaatgattaatatactaaacaattttaaatttaaatgattatttacttaaactataagcaacgtcacg |
37672953 |
T |
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| Q |
500 |
cgatc---cgtgtaaatgtacgagtgttttat |
528 |
Q |
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| T |
37672954 |
cgatccgtcgtgtaaatgtacgagtgttttat |
37672985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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