View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_high_8 (Length: 502)
Name: NF13896_high_8
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Complemental strand, 37809561 - 37809090
Alignment:
| Q |
19 |
caagagttaccctagcagaatcgccgtggttggagacttaggtcttacatacaatacgacatccactgtcaatcatatgatcagcaatcatcctgatctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809561 |
caagagttaccctagcagaatcgccgtggttggagacttaggtcttacatacaatacgacatccactgtcaatcatatgatcagcaatcatcctgatctt |
37809462 |
T |
|
| Q |
119 |
attctattggttggagatgctagttatgctaacatgtatcttactaatggcactggttcagattgctactcttgttcattttctaatactcctatccatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809461 |
attctattggttggagatgctagttatgctaacatgtatcttactaatggcactggttcagattgctactcttgttcattttctaatactcctatccatg |
37809362 |
T |
|
| Q |
219 |
aaacatatcaaccacgttgggattattggggaaggtaaaattttcacttcatcttaattttgacttgagatttcttggttcaaacccagtttatgaaatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37809361 |
aaacatatcaaccacgttgggattattggggaaggtaaaatttttacttcatcttaattttgacttgagatttcttggttcaaacccagtttatgaagtc |
37809262 |
T |
|
| Q |
319 |
aatgttgattatttattcaggtacatggaaccattgatttccagtgtccctgtaatggtagtagaagggaatcatgagatagaagaacaagctgaaaaca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809261 |
aatgttgattatttattcaggtacatggaaccattgatttccagtgtcccggtaatggtagtagaagggaatcatgagatagaagaacaagctgaaaaca |
37809162 |
T |
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| Q |
419 |
agacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtggatcatcttcaactttatatt |
490 |
Q |
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| T |
37809161 |
agacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtgggtcatcttcaactttatatt |
37809090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 37817029 - 37816787
Alignment:
| Q |
19 |
caagagttaccctagcagaatcgccgtggttggagacttaggtcttacatacaatacgacatccactgtcaatcatatgatcagcaatcatcctgatctt |
118 |
Q |
| |
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|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| |
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| T |
37817029 |
caagagctaccctagtagaatcgcagtggtcggagacttaggtcttacatacaataccacatctactgtcaatcatatgaccggcaatcatcctgatctt |
37816930 |
T |
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| Q |
119 |
attctattggttggagatgctagttatgctaacatgtatcttactaatggcactggttcagattgctactcttgttcattttctaatactcctatccatg |
218 |
Q |
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|||||||||||||| |||| ||||||||||||| | |||||||||||||| ||||||||||||||||| ||||| || ||||| |||| || ||||| | |
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| T |
37816929 |
attctattggttggtgatgttagttatgctaacctatatcttactaatggtactggttcagattgctattcttgctcgttttcgaatagccccatccagg |
37816830 |
T |
|
| Q |
219 |
aaacatatcaaccacgttgggattattggggaaggtaaaattt |
261 |
Q |
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| T |
37816829 |
aaacatatcaaccgcgttgggattattggggaaggtaaaattt |
37816787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 315 - 490
Target Start/End: Complemental strand, 37816679 - 37816504
Alignment:
| Q |
315 |
aatcaatgttgattatttattcaggtacatggaaccattgatttccagtgtccctgtaatggtagtagaagggaatcatgagatagaagaacaagctgaa |
414 |
Q |
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||||||||| |||||| |||||||||||||||||| ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37816679 |
aatcaatgtgaattattgattcaggtacatggaacctctgattgctagtgtcccaataatggtagtggaagggaatcatgagatagaagaacaagctgaa |
37816580 |
T |
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| Q |
415 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtggatcatcttcaactttatatt |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||| |
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| T |
37816579 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcagaagagagtggatcatcatccactttctatt |
37816504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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