View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13896_low_12 (Length: 396)

Name: NF13896_low_12
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13896_low_12
NF13896_low_12
[»] chr2 (13 HSPs)
chr2 (34-382)||(44614509-44614857)
chr2 (15-328)||(44623751-44624067)
chr2 (202-312)||(39458954-39459064)
chr2 (178-284)||(39473637-39473743)
chr2 (176-312)||(39137521-39137657)
chr2 (223-312)||(39152307-39152396)
chr2 (166-284)||(39415040-39415158)
chr2 (181-312)||(39487723-39487854)
chr2 (315-382)||(44623655-44623722)
chr2 (178-284)||(39422018-39422124)
chr2 (16-73)||(39152579-39152636)
chr2 (168-210)||(39215415-39215457)
chr2 (24-73)||(39468343-39468392)
[»] chr8 (4 HSPs)
chr8 (219-328)||(40347398-40347507)
chr8 (15-78)||(45342049-45342112)
chr8 (177-382)||(44951213-44951418)
chr8 (315-379)||(40347305-40347369)
[»] chr6 (1 HSPs)
chr6 (19-73)||(16113303-16113357)
[»] chr7 (1 HSPs)
chr7 (176-312)||(19807471-19807607)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 34 - 382
Target Start/End: Complemental strand, 44614857 - 44614509
Alignment:
Q  34 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 44614758  T
Q  134 cttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614757 cttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttc 44614658  T
Q  234 ttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaagttcc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44614657 ttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaagttcc 44614558  T
Q  334 ttaacctcggtctccttattttctagctctttgcagcatttctcaatat 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614557 ttaacctcggtctccttattttctagctctttgcagcatttctcaatat 44614509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 44624067 - 44623751
Alignment:
Q  15 attattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttt 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| |||    
T  44624067 attattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattt 44623968  T
Q  115 tcaatttgctgcatttttccttcaaattcctctacctttgtttcaaa---cattttcactcgacctttaaattcctcctcttctgactggaactccttca 211  Q
    |||| ||||||||||||| |||| |||| |||| |||||| ||||||    | ||||||| || ||||||||||||| |||| ||| ||||||||| |||    
T  44623967 tcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaactttaaattcctcttcttttgattggaactccatca 44623868  T
Q  212 ctcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattc 311  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||| | | |||||||||||||||||| |||  |||||||| |||||    
T  44623867 ctcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattc 44623768  T
Q  312 acccttttcagactcaa 328  Q
    |||||||| ||| ||||    
T  44623767 accctttttagattcaa 44623751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 39459064 - 39458954
Alignment:
Q  202 aactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggc 301  Q
    ||||||||||||  || |||||||| ||||||||||||||| |  |||||  | | ||||||||||||||||||||||||||| || ||||||||| |||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  302 cttcaaattca 312  Q
    |||||||||||    
T  39458964 cttcaaattca 39458954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
Q  178 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 277  Q
    |||||||||||||||| |||||||||||||||||||  ||  | ||||| ||||||||||||||| |  |||||  || |||||||||||||||||||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 39473736  T
Q  278 ctgattc 284  Q
    |||||||    
T  39473737 ctgattc 39473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 39137657 - 39137521
Alignment:
Q  176 ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 275  Q
    |||| |||||||| |||| ||||||||||||||||| |  |  |||| ||| |||||||| || |||||  | ||| ||||||||||| |||||||||||    
T  39137657 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagctgcttctgtcggctctcaaaatgcttctt 39137558  T
Q  276 ttctgattcaaagtccttcaccaggccttcaaattca 312  Q
    ||| ||||| |  |||||||||  |||||||||||||    
T  39137557 ttcagattcgagttccttcaccctgccttcaaattca 39137521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 39152396 - 39152307
Alignment:
Q  223 aattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattca 312  Q
    |||||||||||  ||||||| |  |||||  ||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  39152396 aattccttttccattgattcgagctccttcagtcggctctcgaaatgcttcttttctgattccagcttcttcacctggccttcaaattca 39152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 39415040 - 39415158
Alignment:
Q  166 ttcactcgacctttaaattcctcctcttctgactggaactccttcactc-ttctttcaaattccttttcttttgattcaaattccttttgtcggctctcg 264  Q
    |||||| | ||||| | ||||||||||| |||||||||||| |||| || |||||| || ||  ||||||||||||||||  |||||  || |||| |||    
T  39415040 ttcacttgtcctttgagttcctcctcttttgactggaactctttcattcgttctttgaa-ttgattttcttttgattcaagctccttcagttggctttcg 39415138  T
Q  265 aaatgcttcttttctgattc 284  Q
    ||||||||||||||||||||    
T  39415139 aaatgcttcttttctgattc 39415158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 312
Target Start/End: Original strand, 39487723 - 39487854
Alignment:
Q  181 aattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctg 280  Q
    ||||||||||||| ||||||||||||||||| |  |  ||||  || |||||||| || ||| |  ||||| |||||||||||  ||||||||||||| |    
T  39487723 aattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttcttgtgcttcgagctccttctgtcggctctcagaatgcttcttttcag 39487822  T
Q  281 attcaaagtccttcaccaggccttcaaattca 312  Q
    ||||    ||||||||| ||||||||||||||    
T  39487823 attcgggctccttcacccggccttcaaattca 39487854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 44623722 - 44623655
Alignment:
Q  315 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatat 382  Q
    |||||||| ||||| ||||||||| | ||||||| ||||||||||||||| |||||| ||||||||||    
T  44623722 cttttcagtctcaaattccttaacttgggtctccatattttctagctcttcgcagcacttctcaatat 44623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 39422018 - 39422124
Alignment:
Q  178 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 277  Q
    |||||||||||||||| |||| |||||||||||| |  ||  || |||| ||||||| ||||||| |  |||||  ||||||| || |||||||||||||    
T  39422018 ttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttctttt 39422117  T
Q  278 ctgattc 284  Q
    |||||||    
T  39422118 ctgattc 39422124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 39152636 - 39152579
Alignment:
Q  16 ttattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 73  Q
    ||||| |||||||||||||||||||||  || |||||||| ||| |||||||||||||    
T  39152636 ttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaact 39152579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 39215457 - 39215415
Alignment:
Q  168 cactcgacctttaaattcctcctcttctgactggaactccttc 210  Q
    |||| |||||||||||||||||| || ||||||||||||||||    
T  39215457 cacttgacctttaaattcctcctgttttgactggaactccttc 39215415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 39468392 - 39468343
Alignment:
Q  24 ctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 73  Q
    |||||||| ||| ||||||| |||| |||||||||| |||||||||||||    
T  39468392 ctttgactgaagttccttgacttgtccttcaatctgcttctcttttaact 39468343  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 40347507 - 40347398
Alignment:
Q  219 ttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattcacccttt 318  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |   |||||||||||||||||||||| ||| | ||||||||||||||||    
T  40347507 ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt 40347408  T
Q  319 tcagactcaa 328  Q
    | ||| ||||    
T  40347407 ttagattcaa 40347398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 45342112 - 45342049
Alignment:
Q  15 attattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagt 78  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  45342112 attattcagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaactggagt 45342049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 382
Target Start/End: Original strand, 44951213 - 44951418
Alignment:
Q  177 tttaaattcctcctcttctgactggaactccttcactc-ttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 275  Q
    ||||||||||||||||| |||||| ||||||||| ||  |||||| || ||  |||||| |||||||||| |||||   |||| ||||||||||    ||    
T  44951213 tttaaattcctcctcttttgactgaaactccttctcttgttctttgaattta-ttttctcttgattcaaactccttcattcggatctcgaaatgtgcttt 44951311  T
Q  276 ttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttc 375  Q
    ||| |||||||| ||||| ||  ||||   || |  |  ||||| |||||||||||| ||||| | ||||||||||||||| ||||||| |||||| |||    
T  44951312 ttcagattcaaactcctttactcggccaataagtatattctttttagactcaagttcattaacttgggtctccttattttcaagctcttcgcagcacttc 44951411  T
Q  376 tcaatat 382  Q
    | |||||    
T  44951412 ttaatat 44951418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 40347369 - 40347305
Alignment:
Q  315 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaa 379  Q
    ||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| || |||||||    
T  40347369 cttttcagattcaagtttcttaacttgggtctccatattttctagctctttgcaacacttctcaa 40347305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 16113357 - 16113303
Alignment:
Q  19 ttcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 73  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  16113357 ttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaact 16113303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 19807607 - 19807471
Alignment:
Q  176 ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 275  Q
    |||| |||||||| |||| ||||||||||||||||| |  |  |||| ||| |||||||| || ||| |    ||| |||||||||||||||||||||||    
T  19807607 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgagccgcttctgtcggctctcgaaatgcttctt 19807508  T
Q  276 ttctgattcaaagtccttcaccaggccttcaaattca 312  Q
    ||| ||||| |  |||||| || ||||||||||||||    
T  19807507 ttcagattcgagctccttcgcccggccttcaaattca 19807471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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