View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13896_low_15 (Length: 349)
Name: NF13896_low_15
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 15035641 - 15035312
Alignment:
| Q |
1 |
atacataccattgaaaactgtttgagtgtagctgcaaccataaccaagaggcatttctccaacaagattttgcgtcgaacctttctcccaccatgtggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15035641 |
atacataccattgaaaactgtttgagtgtagctgcaaccataaccaagaggcatttctccaacaagattttgcgtcgaacgtttctcccaccatgtggat |
15035542 |
T |
|
| Q |
101 |
tgagcagtaccttcaagacctgatagaaaaggagtctttccatctatgtctaagtcactctttgaacgattgctaaaacttgaataaatagaacttggcc |
200 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15035541 |
tgagtagtaccatcaagacctgatagaaaaggagtctttccatctatgtctaagtcactctttgaacgattgctaaaacttgaataaatagaacttggcc |
15035442 |
T |
|
| Q |
201 |
ctcgtagaattgacacaaaatttggtgctgtagcaattgtgtaagaatctgtagtctctctgttataatcaagtagaaaataataagaaatctccaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15035441 |
ctcgtagaattgacacaaaatttggtgctgtagcaattgtgtaagaatctgtagtctctctgttataatcaagtagaaaataataagaaatctccaatct |
15035342 |
T |
|
| Q |
301 |
cattcacatgttaaccatcataggcaagta |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15035341 |
cattcacatgttaaccatcataggcaagta |
15035312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University