View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_low_16 (Length: 336)
Name: NF13896_low_16
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 37 - 303
Target Start/End: Complemental strand, 432736 - 432475
Alignment:
| Q |
37 |
atgatttgatattttcttttgtacttgtctccgaattaactcaaacttatctgatggatgcttggatagaggacgtagttatatgaatattcaaagttgc |
136 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
432736 |
atgatttgatattttcttttgtacgtgtctccgaaataactcaaacttatctaatggatgcttggacagaggagagagttatatgaatattcaaagctgc |
432637 |
T |
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| Q |
137 |
ttggaaactctcaatttgttttgcattcatttcaaccatataagcttatatatgcatatatgctagctgaagtggaaaaggttttggactgcggaagcat |
236 |
Q |
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|||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||| |
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| T |
432636 |
ttggaagctctcagtttattttccattcatttcaaccatataagcttatatatgcatatatgctagttgaagtgggaaaggttt-----tgttgaagcat |
432542 |
T |
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| Q |
237 |
atagcagaaggcaagggtgttttaaaattagcgtgacttaactcacgctgcgcaacttaagtcacgc |
303 |
Q |
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| T |
432541 |
atagcagaaggcaagggtgttttaaaactagcgtgacttaactcacgctgcgtgagttaagtcacgc |
432475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 432845 - 432898
Alignment:
| Q |
230 |
gaagcatatagcagaaggcaagggtgttttaaaattagcgtgacttaactcacg |
283 |
Q |
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| T |
432845 |
gaagcatgtagcagaaggtaagggtgttttaaaactagcgtgagttaactcacg |
432898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 98 - 303
Target Start/End: Original strand, 701826 - 702031
Alignment:
| Q |
98 |
ttggatagaggacgtagttatatgaatattcaaagttgcttggaaactctcaatttgttttgcattcatttcaaccatataagcttatatatgcatatat |
197 |
Q |
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| T |
701826 |
ttggatagaggacggagttatatgaatattcaaagctgcttggaaactctcagtttgttttgcattcatttcaaccatataagcttatatatgcatatat |
701925 |
T |
|
| Q |
198 |
gctagctgaagtggaaaaggttttggactgcggaagcatatagcagaaggcaagggtgttttaaaattagcgtgacttaactcacgctgcgcaacttaag |
297 |
Q |
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||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| | ||||| |
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| T |
701926 |
gctagctgaagtggaaaaggtttcgaactgctgaagcatatagcagaaggcaagggtgttttaaaattagtgtgacttaacttatgctgcgtgagttaag |
702025 |
T |
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| Q |
298 |
tcacgc |
303 |
Q |
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|||||| |
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| T |
702026 |
tcacgc |
702031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 701772 - 701824
Alignment:
| Q |
1 |
gtgtctctgaaataactcaaatttatcatgctcagtatgatttgatattttct |
53 |
Q |
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| T |
701772 |
gtgtctctgaaataactcaaacttatcatgctcagtatgatttgatattttct |
701824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 701738 - 701798
Alignment:
| Q |
27 |
catgctcagtatgatttgatattttcttttgtacttgtctccgaattaactcaaacttatc |
87 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |
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| T |
701738 |
catgctgagtatgatttgatattttcttttgtacgtgtctctgaaataactcaaacttatc |
701798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 3828170 - 3827971
Alignment:
| Q |
27 |
catgctcagtatgatttgatattttcttttgtacttgtctccgaattaactcaaacttatctgatggatgcttggatagaggacgtagttatatgaatat |
126 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |
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| T |
3828170 |
catgctcagtatgatttgatattttcttttgtatgtgtctccgaaataactcaaacttatctgatgggtgcttggacagaggacagagttatatgaatat |
3828071 |
T |
|
| Q |
127 |
tcaaagttgcttggaaactctcaatttgttttgcattcatttcaaccatataagcttatatatgcatatatgctagctgaagtggaaaaggttttggact |
226 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
3828070 |
tcaaagctgcttggaaactctcagtttgttttgcattcatttcaaccatataagcttatatatgcacatatgctagctgaagtgggaaaggtttcggact |
3827971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 3841743 - 3841544
Alignment:
| Q |
27 |
catgctcagtatgatttgatattttcttttgtacttgtctccgaattaactcaaacttatctgatggatgcttggatagaggacgtagttatatgaatat |
126 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |
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| T |
3841743 |
catgctcagtatgatttgatattttcttttgtatgtgtctccgaaataactcaaacttatctgatgggtgcttggacagaggacagagttatatgaatat |
3841644 |
T |
|
| Q |
127 |
tcaaagttgcttggaaactctcaatttgttttgcattcatttcaaccatataagcttatatatgcatatatgctagctgaagtggaaaaggttttggact |
226 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
3841643 |
tcaaagctgcttggaaactctcagtttgttttgcattcatttcaaccatataagcttatatatgcacatatgctagctgaagtgggaaaggtttcggact |
3841544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 41646152 - 41646251
Alignment:
| Q |
121 |
gaatattcaaagttgcttggaaactctcaatttgttttgcattcatttcaaccatataagcttatatatgcatatatgctagctgaagtggaaaaggttt |
220 |
Q |
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|||||||| ||| ||||||| |||||||| ||| || ||| | | ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
41646152 |
gaatattcgaaggtgcttgggaactctcagtttattctgcttccgtttcagccatataagcttatatatgcatatatgctagccgaagtgggaaaggttt |
41646251 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 36153969 - 36154006
Alignment:
| Q |
267 |
gcgtgacttaactcacgctgcgcaacttaagtcacgca |
304 |
Q |
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| T |
36153969 |
gcgtgacttaactcacgcggcgtaacttaagtcacgca |
36154006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 46183134 - 46183083
Alignment:
| Q |
232 |
agcatatagcagaaggcaagggtgttttaaaattagcgtgacttaactcacg |
283 |
Q |
| |
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||||| ||| |||||| ||||||||||||||| |||||||| |||||||||| |
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| T |
46183134 |
agcatgtagaagaaggaaagggtgttttaaaactagcgtgagttaactcacg |
46183083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 44836406 - 44836442
Alignment:
| Q |
266 |
agcgtgacttaactcacgctgcgcaacttaagtcacg |
302 |
Q |
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|||||||||||| |||||| ||||||||||||||||| |
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| T |
44836406 |
agcgtgacttaagtcacgcagcgcaacttaagtcacg |
44836442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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