View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_low_19 (Length: 240)
Name: NF13896_low_19
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 33172988 - 33172773
Alignment:
| Q |
6 |
gagaagaaggattaaatgaatatatgtggtatggccttttcttgaccatatacaaaggagcaagagagtcgatctcaaagacaacgtttgtaagacctaa |
105 |
Q |
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| T |
33172988 |
gagaagaaggattaaatgagtatatgtggtatggccttttcttgaccatatacaaaggagcaagagagtcgatctcaaagacaacgtttgtaagacctaa |
33172889 |
T |
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| Q |
106 |
gtcacgggtaagatagataccgctgcgaaggcctcatgattatgcaaatatgaagctacaaaaattaaccatacaatataagttctttaaaaaattacca |
205 |
Q |
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| T |
33172888 |
atcacgggcaagatagataccgctgcgaaggcctcatgattctgcaaagatggagctacaagaattaaccatacaatagaagttctttaaaaaattacca |
33172789 |
T |
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| Q |
206 |
tgatgaatctcgtaag |
221 |
Q |
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||||| |||||||||| |
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| T |
33172788 |
tgatggatctcgtaag |
33172773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 12824131 - 12824260
Alignment:
| Q |
6 |
gagaagaaggattaaatgaatatatgtggtatggccttttcttgaccatatacaaaggagcaagagagtcgatctcaaagacaacgtttgtaagacctaa |
105 |
Q |
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|||||||||||| |||||| |||| |||||||| || ||||||| |||||| ||| |||||||||| ||| | |||||||| || | | ||| ||| || |
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| T |
12824131 |
gagaagaaggatcaaatgagtataagtggtatgacc-tttcttggccatatgaaaaagagcaagagaatcggtttcaaagacgacctctataacacccaa |
12824229 |
T |
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| Q |
106 |
gtcacgggtaagatagataccgctgcgaagg |
136 |
Q |
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||||| | |||||||| |||||| |||||| |
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| T |
12824230 |
atcacgagcaagatagagaccgcttcgaagg |
12824260 |
T |
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