View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13896_low_22 (Length: 218)

Name: NF13896_low_22
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13896_low_22
NF13896_low_22
[»] chr4 (9 HSPs)
chr4 (18-55)||(13984988-13985025)
chr4 (18-51)||(29114261-29114294)
chr4 (18-50)||(45899414-45899446)
chr4 (18-48)||(12708865-12708895)
chr4 (18-48)||(42650656-42650686)
chr4 (18-48)||(48620317-48620347)
chr4 (18-48)||(49668135-49668165)
chr4 (18-47)||(30198803-30198832)
chr4 (18-47)||(38136866-38136895)
[»] chr3 (9 HSPs)
chr3 (18-60)||(53888507-53888549)
chr3 (18-51)||(38639609-38639642)
chr3 (18-48)||(33944671-33944701)
chr3 (22-51)||(1132953-1132982)
chr3 (18-47)||(44400729-44400758)
chr3 (18-51)||(49183715-49183748)
chr3 (18-51)||(53664627-53664660)
chr3 (18-46)||(50948226-50948254)
chr3 (18-46)||(51686526-51686554)
[»] chr8 (7 HSPs)
chr8 (18-51)||(6943484-6943517)
chr8 (18-51)||(36837516-36837549)
chr8 (18-49)||(79643-79674)
chr8 (18-60)||(10589824-10589866)
chr8 (18-48)||(31297379-31297409)
chr8 (18-51)||(26772670-26772703)
chr8 (18-47)||(41866149-41866178)
[»] chr7 (8 HSPs)
chr7 (18-55)||(2826271-2826308)
chr7 (18-60)||(4788021-4788063)
chr7 (18-48)||(16805598-16805628)
chr7 (18-48)||(31055394-31055424)
chr7 (18-51)||(4058167-4058200)
chr7 (22-55)||(19644325-19644358)
chr7 (18-51)||(38505362-38505395)
chr7 (18-51)||(43348257-43348290)
[»] chr6 (4 HSPs)
chr6 (18-51)||(32719404-32719437)
chr6 (18-57)||(22788540-22788579)
chr6 (22-51)||(26713887-26713916)
chr6 (18-50)||(12779534-12779566)
[»] chr5 (3 HSPs)
chr5 (20-51)||(5772748-5772779)
chr5 (18-51)||(10438006-10438039)
chr5 (18-51)||(19389846-19389879)
[»] scaffold0031 (1 HSPs)
scaffold0031 (18-48)||(93537-93567)
[»] chr2 (9 HSPs)
chr2 (18-48)||(1364853-1364883)
chr2 (18-48)||(11515064-11515094)
chr2 (18-60)||(11522199-11522241)
chr2 (18-48)||(26905824-26905854)
chr2 (18-48)||(34757625-34757655)
chr2 (18-51)||(15803208-15803241)
chr2 (18-51)||(16813654-16813687)
chr2 (18-51)||(16852933-16852966)
chr2 (18-46)||(37194287-37194315)
[»] chr1 (7 HSPs)
chr1 (18-48)||(2909138-2909168)
chr1 (18-48)||(5584525-5584555)
chr1 (18-48)||(41817330-41817360)
chr1 (18-48)||(52068168-52068198)
chr1 (18-51)||(17760503-17760536)
chr1 (18-51)||(34154356-34154389)
chr1 (18-46)||(37649649-37649677)
[»] scaffold0274 (1 HSPs)
scaffold0274 (22-55)||(15941-15974)
[»] scaffold0248 (1 HSPs)
scaffold0248 (18-47)||(228-257)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-49)||(90905-90934)


Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 13985025 - 13984988
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggaggattt 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13985025 actaaaaaattgtattggaggagggttttggaggattt 13984988  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 29114294 - 29114261
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||||||    
T  29114294 actaaaaaattgtattggaggagggttttggagg 29114261  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 45899414 - 45899446
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggag 50  Q
    |||||||||||||||||||||||||||||||||    
T  45899414 actaaaaaattgtattggaggagggttttggag 45899446  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 12708895 - 12708865
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  12708895 actaaaaaattgtattggaggagggttttgg 12708865  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 42650656 - 42650686
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  42650656 actaaaaaattgtattggaggagggttttgg 42650686  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 48620317 - 48620347
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  48620317 actaaaaaattgtattggaggagggttttgg 48620347  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 49668165 - 49668135
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  49668165 actaaaaaattgtattggaggagggttttgg 49668135  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 30198832 - 30198803
Alignment:
Q  18 actaaaaaattgtattggaggagggttttg 47  Q
    ||||||||||||||||||||||||||||||    
T  30198832 actaaaaaattgtattggaggagggttttg 30198803  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 38136895 - 38136866
Alignment:
Q  18 actaaaaaattgtattggaggagggttttg 47  Q
    ||||||||||||||||||||||||||||||    
T  38136895 actaaaaaattgtattggaggagggttttg 38136866  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 53888507 - 53888549
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggaggatttgggag 60  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  53888507 actaaaaaattgtattggaggagggttttggggggtttgggag 53888549  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 38639609 - 38639642
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||||||    
T  38639609 actaaaaaattgtattggaggagggttttggagg 38639642  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 33944701 - 33944671
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  33944701 actaaaaaattgtattggaggagggttttgg 33944671  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 1132982 - 1132953
Alignment:
Q  22 aaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||    
T  1132982 aaaaattgtattggaggagggttttggagg 1132953  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 44400729 - 44400758
Alignment:
Q  18 actaaaaaattgtattggaggagggttttg 47  Q
    ||||||||||||||||||||||||||||||    
T  44400729 actaaaaaattgtattggaggagggttttg 44400758  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 49183715 - 49183748
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    |||||||||||||||| |||||||||||||||||    
T  49183715 actaaaaaattgtattagaggagggttttggagg 49183748  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 53664660 - 53664627
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  53664660 actaaaaaattgtattggaggagggttttcgagg 53664627  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 50948226 - 50948254
Alignment:
Q  18 actaaaaaattgtattggaggagggtttt 46  Q
    |||||||||||||||||||||||||||||    
T  50948226 actaaaaaattgtattggaggagggtttt 50948254  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 51686526 - 51686554
Alignment:
Q  18 actaaaaaattgtattggaggagggtttt 46  Q
    |||||||||||||||||||||||||||||    
T  51686526 actaaaaaattgtattggaggagggtttt 51686554  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 6943517 - 6943484
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||||||    
T  6943517 actaaaaaattgtattggaggagggttttggagg 6943484  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 36837549 - 36837516
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||||||    
T  36837549 actaaaaaattgtattggaggagggttttggagg 36837516  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 79674 - 79643
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgga 49  Q
    ||||||||||||||||||||||||||||||||    
T  79674 actaaaaaattgtattggaggagggttttgga 79643  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 10589824 - 10589866
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggaggatttgggag 60  Q
    |||||||||||||||||||||||| |||||| || ||||||||    
T  10589824 actaaaaaattgtattggaggaggattttggggggtttgggag 10589866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 31297409 - 31297379
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  31297409 actaaaaaattgtattggaggagggttttgg 31297379  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 26772703 - 26772670
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||| ||||||||||||||    
T  26772703 actaaaaaattgtattggatgagggttttggagg 26772670  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 41866178 - 41866149
Alignment:
Q  18 actaaaaaattgtattggaggagggttttg 47  Q
    ||||||||||||||||||||||||||||||    
T  41866178 actaaaaaattgtattggaggagggttttg 41866149  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2826308 - 2826271
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggaggattt 55  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  2826308 actaaaaaattgtattggaggagggttttgggggattt 2826271  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 4788063 - 4788021
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggaggatttgggag 60  Q
    |||||||||||||||||||| |||||||||  |||||||||||    
T  4788063 actaaaaaattgtattggagtagggttttgagggatttgggag 4788021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 16805628 - 16805598
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  16805628 actaaaaaattgtattggaggagggttttgg 16805598  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 31055394 - 31055424
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  31055394 actaaaaaattgtattggaggagggttttgg 31055424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 4058200 - 4058167
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||| ||||||||||||||    
T  4058200 actaaaaaattgtattggatgagggttttggagg 4058167  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 19644325 - 19644358
Alignment:
Q  22 aaaaattgtattggaggagggttttggaggattt 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  19644325 aaaaattgtattggatgagggttttggaggattt 19644358  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 38505395 - 38505362
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    |||| |||||||||||||||||||||||||||||    
T  38505395 actataaaattgtattggaggagggttttggagg 38505362  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 43348290 - 43348257
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    |||||||||||||||| |||||||||||||||||    
T  43348290 actaaaaaattgtattagaggagggttttggagg 43348257  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32719437 - 32719404
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||||||    
T  32719437 actaaaaaattgtattggaggagggttttggagg 32719404  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 22788579 - 22788540
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggaggatttgg 57  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  22788579 actaaaaaattgtattggaggagggttttagaggttttgg 22788540  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 26713887 - 26713916
Alignment:
Q  22 aaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||    
T  26713887 aaaaattgtattggaggagggttttggagg 26713916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 12779534 - 12779566
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggag 50  Q
    |||||||| ||||||||||||||||||||||||    
T  12779534 actaaaaagttgtattggaggagggttttggag 12779566  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 5772779 - 5772748
Alignment:
Q  20 taaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||||||||||||    
T  5772779 taaaaaattgtattggaggagggttttggagg 5772748  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 10438006 - 10438039
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    |||||||| |||||||||||||||||||||||||    
T  10438006 actaaaaagttgtattggaggagggttttggagg 10438039  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 19389879 - 19389846
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    |||||||||||||||||||||||| |||||||||    
T  19389879 actaaaaaattgtattggaggaggattttggagg 19389846  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 93567 - 93537
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  93567 actaaaaaattgtattggaggagggttttgg 93537  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 1364853 - 1364883
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  1364853 actaaaaaattgtattggaggagggttttgg 1364883  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 11515064 - 11515094
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  11515064 actaaaaaattgtattggaggagggttttgg 11515094  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11522241 - 11522199
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggaggatttgggag 60  Q
    |||||||| |||||||||||||||||||||| || ||||||||    
T  11522241 actaaaaagttgtattggaggagggttttggggggtttgggag 11522199  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 26905824 - 26905854
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  26905824 actaaaaaattgtattggaggagggttttgg 26905854  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 34757625 - 34757655
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  34757625 actaaaaaattgtattggaggagggttttgg 34757655  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 15803208 - 15803241
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    |||||||||||||||||||||||| |||||||||    
T  15803208 actaaaaaattgtattggaggaggattttggagg 15803241  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 16813654 - 16813687
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||| ||||||||||    
T  16813654 actaaaaaattgtattggaggagagttttggagg 16813687  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 16852933 - 16852966
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||||| ||||||||||    
T  16852933 actaaaaaattgtattggaggagagttttggagg 16852966  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 37194287 - 37194315
Alignment:
Q  18 actaaaaaattgtattggaggagggtttt 46  Q
    |||||||||||||||||||||||||||||    
T  37194287 actaaaaaattgtattggaggagggtttt 37194315  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 2909138 - 2909168
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  2909138 actaaaaaattgtattggaggagggttttgg 2909168  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 5584525 - 5584555
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  5584525 actaaaaaattgtattggaggagggttttgg 5584555  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 41817360 - 41817330
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  41817360 actaaaaaattgtattggaggagggttttgg 41817330  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 52068198 - 52068168
Alignment:
Q  18 actaaaaaattgtattggaggagggttttgg 48  Q
    |||||||||||||||||||||||||||||||    
T  52068198 actaaaaaattgtattggaggagggttttgg 52068168  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 17760536 - 17760503
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||| ||||||||||||    
T  17760536 actaaaaaattgtattggaggggggttttggagg 17760503  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 34154389 - 34154356
Alignment:
Q  18 actaaaaaattgtattggaggagggttttggagg 51  Q
    ||||||||||||||||||||| ||||||||||||    
T  34154389 actaaaaaattgtattggaggggggttttggagg 34154356  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 37649677 - 37649649
Alignment:
Q  18 actaaaaaattgtattggaggagggtttt 46  Q
    |||||||||||||||||||||||||||||    
T  37649677 actaaaaaattgtattggaggagggtttt 37649649  T

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Target: scaffold0274 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 15941 - 15974
Alignment:
Q  22 aaaaattgtattggaggagggttttggaggattt 55  Q
    ||||||||||||||||||||||||||| ||||||    
T  15941 aaaaattgtattggaggagggttttgggggattt 15974  T

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Target: scaffold0248 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 257 - 228
Alignment:
Q  18 actaaaaaattgtattggaggagggttttg 47  Q
    ||||||||||||||||||||||||||||||    
T  257 actaaaaaattgtattggaggagggttttg 228  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 90934 - 90905
Alignment:
Q  20 taaaaaattgtattggaggagggttttgga 49  Q
    ||||||||||||||||||||||||||||||    
T  90934 taaaaaattgtattggaggagggttttgga 90905  T

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