View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13896_low_3 (Length: 676)

Name: NF13896_low_3
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13896_low_3
NF13896_low_3
[»] chr6 (22 HSPs)
chr6 (346-618)||(21150199-21150466)
chr6 (29-255)||(21355615-21355838)
chr6 (15-144)||(33713840-33713969)
chr6 (471-546)||(21181559-21181634)
chr6 (500-565)||(21352233-21352299)
chr6 (465-528)||(31106485-31106548)
chr6 (470-544)||(21267154-21267228)
chr6 (465-543)||(31094768-31094846)
chr6 (183-244)||(33713769-33713831)
chr6 (494-562)||(21190469-21190538)
chr6 (472-544)||(21136783-21136855)
chr6 (476-593)||(21147277-21147401)
chr6 (345-417)||(33706469-33706541)
chr6 (345-402)||(21173954-21174011)
chr6 (472-539)||(21233462-21233530)
chr6 (502-554)||(21313062-21313114)
chr6 (536-593)||(21184371-21184429)
chr6 (476-561)||(21279840-21279926)
chr6 (319-369)||(21355538-21355588)
chr6 (604-660)||(21219984-21220041)
chr6 (15-80)||(21257215-21257280)
chr6 (389-434)||(33711900-33711945)
[»] scaffold0016 (2 HSPs)
scaffold0016 (247-546)||(64973-65275)
scaffold0016 (501-579)||(74842-74921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (490-550)||(20109-20168)
[»] scaffold0202 (1 HSPs)
scaffold0202 (465-543)||(3484-3562)
[»] chr8 (1 HSPs)
chr8 (478-531)||(24944361-24944414)
[»] scaffold0272 (1 HSPs)
scaffold0272 (465-505)||(3455-3495)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 346 - 618
Target Start/End: Complemental strand, 21150466 - 21150199
Alignment:
Q  346 atatcatatcacaactgaaaaatgatgaatggtacaatggcctgattaaagtgaatccaataccctaaacaatactaccataaactacagggtaataatc 445  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  21150466 atatcatatcacaactgaaaaatgatgaatggtgcaatggcttgattaaagtgaatccaatgccatagacaatactaccataaactacagggtaataatc 21150367  T
Q  446 caaatcaatatcaatagttaatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcc 545  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||     
T  21150366 caaatcaatatcaatagttaatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaagcatcttcattattctct 21150267  T
Q  546 tcttcctt-acattagactttggatcctcaattttttcctcaatttctcgttttttatcaattggatttatttg 618  Q
    |||||||| |||||||||||      ||||| ||||||||||||||||| |  ||||||||||| |||||||||    
T  21150266 tcttccttaacattagactt------ctcaactttttcctcaatttctcttcatttatcaattgtatttatttg 21150199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 21355838 - 21355615
Alignment:
Q  29 tgtttgatcaaaatgtaatacatttctttgtacatataagataactagatttcaaaggatttgggaaataaatgaacctgtcaaaaaatggtacctttcc 128  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||| | |||||||||||||||||||||    |||||||||||||||  |||| |||||    
T  21355838 tgtttgatcaaaatgaaattcatttctttgtacttataagataacaaaatttcaaaggatttgggaaat----gaacctgtcaaaaaacagtacttttcc 21355743  T
Q  129 tttttaactttagtttattatttgcaacaaaaagtgatggctttgtaacataagatgaatttcatttgctactttaagatacataat-aaattttctcac 227  Q
    |||| || ||||||||||| |||||||||||||||||| ||||||||||||||  |||||||||||| ||||||| | |||||| || ||||||||||||    
T  21355742 ttttcaaatttagtttattgtttgcaacaaaaagtgatagctttgtaacataatctgaatttcattttctactttgaaatacattataaaattttctcac 21355643  T
Q  228 tagatgatgctttgatattgctgttata 255  Q
     || |||||||||||||| |||| ||||    
T  21355642 aaggtgatgctttgatatcgctgctata 21355615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 33713969 - 33713840
Alignment:
Q  15 acttatggcctacatgtttgatcaaaatgtaatacatttctttgtacatataagataactagatttcaaaggatttgggaaataaatgaacctgtcaaaa 114  Q
    ||||||||| || || |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33713969 acttatggcttaaatttttgatcaaaatgtaattaatttctttgtacagataagataactagatttcaaaggatttgggaaataaatgaacctgtcaaaa 33713870  T
Q  115 aatggtacctttcctttttaactttagttt 144  Q
    |||||||||||||| ||| ||| |||||||    
T  33713869 aatggtacctttccatttcaacattagttt 33713840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 21181634 - 21181559
Alignment:
Q  471 taatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcct 546  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||    
T  21181634 taatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatcattattctcct 21181559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 565
Target Start/End: Complemental strand, 21352299 - 21352233
Alignment:
Q  500 tgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctt-acattagacttt 565  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  21352299 tgacaatgttttatgtgcatctaataaaacatgttcatcattctccacttccttaacattagacttt 21352233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 528
Target Start/End: Original strand, 31106485 - 31106548
Alignment:
Q  465 aatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaag 528  Q
    |||| |||||| ||||||||||||| |||||||||||| | |||||||||||||||||| ||||    
T  31106485 aatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag 31106548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 544
Target Start/End: Complemental strand, 21267228 - 21267154
Alignment:
Q  470 ataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctc 544  Q
    |||||| |||||||||||||||||| || |||||  ||||| |||||||||||| ||| ||| ||||||||||||    
T  21267228 ataatgcatttaaaatgattatgttgaaagtgacggtgttttatgtgcatctaaaaaatcattttcatcattctc 21267154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 543
Target Start/End: Complemental strand, 31094846 - 31094768
Alignment:
Q  465 aatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattct 543  Q
    |||| ||||||||||||||||| || ||||||||| |||  || ||||||||||||||| |||| ||| ||||||||||    
T  31094846 aatacataatgtatttaaaatggttttgttaaatgcgacggtgcttcatgtgcatctaaaaaagtatcatcatcattct 31094768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 33713831 - 33713769
Alignment:
Q  183 atgaatttcatttgctactttaagatacataataaa-ttttctcactagatgatgctttgata 244  Q
    ||||||||||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||    
T  33713831 atgaatttcattttctactttcaaatacataataaatttttctcactatatgatgctttgata 33713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 21190538 - 21190469
Alignment:
Q  494 taaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctt-acattagac 562  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||  ||||| |||||||| |||||||||    
T  21190538 taaatgtgacaatgtttcatgttcatctaaaaaagcatcttaattgttctcatcttccttaacattagac 21190469  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 544
Target Start/End: Complemental strand, 21136855 - 21136783
Alignment:
Q  472 aatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctc 544  Q
    |||| ||||||||| | ||||||||  |||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  21136855 aatgcatttaaaattaatatgttaagagtgacactgttttatgtgcatctaaaaaagcattttcatcattctc 21136783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 593
Target Start/End: Complemental strand, 21147401 - 21147277
Alignment:
Q  476 tatttaaaatgattatgttaaatgtgacaatgttt-----catgtgcatctaataaag-catcttcatcattctcctcttcctt-acattagactttgga 568  Q
    |||||||||||||| |||| ||||||||| |||||     |||||||||| || |||  |||  |||||||||||||||||||| ||||||||||||  |    
T  21147401 tatttaaaatgattctgtttaatgtgacattgttttatgtcatgtgcatccaaaaaaaacatagtcatcattctcctcttccttaacattagactttcta 21147302  T
Q  569 tcctcaattttttcctcaatttctc 593  Q
    | ||||| |||||| ||||||||||    
T  21147301 ttctcaactttttcgtcaatttctc 21147277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 33706541 - 33706469
Alignment:
Q  345 tatatcatatcacaactgaaaaatgatgaatggtacaatggcctgattaaagtgaatccaataccctaaacaa 417  Q
    |||| ||| |||||||||||||| |||||||||| ||||||| |||||||| |||||||| | || |||||||    
T  33706541 tataacatctcacaactgaaaaaggatgaatggtgcaatggcttgattaaattgaatccatttccataaacaa 33706469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 21174011 - 21173954
Alignment:
Q  345 tatatcatatcacaactgaaaaatgatgaatggtacaatggcctgattaaagtgaatc 402  Q
    |||| ||| |||||||||||||| | |||||||| ||||||| |||||||||||||||    
T  21174011 tataacatctcacaactgaaaaaggttgaatggtgcaatggcttgattaaagtgaatc 21173954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 539
Target Start/End: Complemental strand, 21233530 - 21233462
Alignment:
Q  472 aatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatc-taataaagcatcttcatca 539  Q
    ||||| |||| ||||||| |||||||||||| ||||||||||| ||||| ||| ||| |||||||||||    
T  21233530 aatgtgtttataatgattctgttaaatgtgaaaatgtttcatgcgcatcataaaaaaacatcttcatca 21233462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Complemental strand, 21313114 - 21313062
Alignment:
Q  502 acaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctta 554  Q
    |||||||||| |||||||||||  |||||||||| ||||| ||||||||||||    
T  21313114 acaatgtttcgtgtgcatctaaagaagcatcttcgtcattgtcctcttcctta 21313062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 593
Target Start/End: Complemental strand, 21184429 - 21184371
Alignment:
Q  536 atcattctcctcttcctta-cattagactttggatcctcaattttttcctcaatttctc 593  Q
    ||||||||||||||||||| ||| |||||||  || ||||| |||||||||||||||||    
T  21184429 atcattctcctcttccttaacatcagactttctattctcaactttttcctcaatttctc 21184371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 561
Target Start/End: Complemental strand, 21279926 - 21279840
Alignment:
Q  476 tatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctc-ttccttacattaga 561  Q
    |||||||||||||| | ||| | ||||||  |||||||||  |||| | |||||||||||||||||||| || ||| ||||||||||    
T  21279926 tatttaaaatgattctattatacgtgacacagtttcatgtatatcttaaaaagcatcttcatcattctcatctttctttacattaga 21279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 21355588 - 21355538
Alignment:
Q  319 tgaaaataactacatccaggtaaacttatatcatatcacaactgaaaaatg 369  Q
    |||||||||||| |||  ||||||| |||||||| ||||||||||||||||    
T  21355588 tgaaaataactagatcgcggtaaacatatatcatctcacaactgaaaaatg 21355538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 660
Target Start/End: Complemental strand, 21220041 - 21219984
Alignment:
Q  604 aattggatttatttgtatcatg-gattcctttatcagttggatttattgaatggttca 660  Q
    ||||||||||||||| | |||  ||||||||||||| ||||||| |||||||||||||    
T  21220041 aattggatttatttgcaacattagattcctttatcaattggattgattgaatggttca 21219984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 21257280 - 21257215
Alignment:
Q  15 acttatggcctacatgtttgatcaaaatgtaatacatttctttgtacatataagataactagattt 80  Q
    ||||||||| |||||||| | ||||||||||||  ||||||||||  | ||||||||| |||||||    
T  21257280 acttatggcttacatgttcgttcaaaatgtaattgatttctttgtgtagataagataagtagattt 21257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 33711945 - 33711900
Alignment:
Q  389 gattaaagtgaatccaataccctaaacaatactaccataaactaca 434  Q
    |||||||||||||||||| || ||||||| ||||||||||| ||||    
T  33711945 gattaaagtgaatccaatgccataaacaacactaccataaattaca 33711900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 247 - 546
Target Start/End: Original strand, 64973 - 65275
Alignment:
Q  247 gctgttatactttgaaaaacataatgaatttcatttctttgtaaagataatatgaatgtcattgtaataaggtgaaaataactacatccaggtaaactta 346  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||  |||| |  ||||||||||||||||||||||||||||| ||  |    
T  64973 gctgttatactttgaaatacacaatgaatttcatttctttgtacagataatatgagagtcacttgaataaggtgaaaataactacatccaggtagacaca 65072  T
Q  347 tatcatatcacaactgaaaaatgatgaatggtacaatggcctgattaaagtgaatccaataccctaaacaatactaccataaactacagggta---ataa 443  Q
    || ||| ||||||| ||||||||||||||||| ||||||| |||||||| |||||||||| || ||||||||||||||||||||||||| |||   ||||    
T  65073 taccatctcacaaccgaaaaatgatgaatggtgcaatggcttgattaaactgaatccaatgccataaacaatactaccataaactacagagtaagtataa 65172  T
Q  444 tccaaatcaatatcaatagttaatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattct 543  Q
    | |||| |||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||    
T  65173 ttcaaagcaatatcaatggtaaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaagcatcttcatcattct 65272  T
Q  544 cct 546  Q
    |||    
T  65273 cct 65275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 501 - 579
Target Start/End: Original strand, 74842 - 74921
Alignment:
Q  501 gacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctt-acattagactttggatcctcaatttt 579  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||  || |||||||||    
T  74842 gacaatgtttcatgttcatctaataaagcaccttcattattctcctcttccttaacattagactttctattctcaatttt 74921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 550
Target Start/End: Complemental strand, 20168 - 20109
Alignment:
Q  490 atgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttc 550  Q
    |||||| |||||||||| |||||||||||||||| |||||| | |||||||||||||||||    
T  20168 atgttatatgtgacaatctttcatgtgcatctaa-aaagcaacatcatcattctcctcttc 20109  T

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Target: scaffold0202 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 543
Target Start/End: Complemental strand, 3562 - 3484
Alignment:
Q  465 aatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattct 543  Q
    |||| ||||||||||||||||| || ||||||||||| || || ||||||||| ||||| |||| ||| || |||||||    
T  3562 aatacataatgtatttaaaatggttttgttaaatgtggcagtgcttcatgtgcttctaaaaaagtatcatcgtcattct 3484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 531
Target Start/End: Complemental strand, 24944414 - 24944361
Alignment:
Q  478 tttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcat 531  Q
    |||| ||||||| |||||||||||||||| ||| |||||||||| | |||||||    
T  24944414 tttataatgattttgttaaatgtgacaatattttatgtgcatctgaaaaagcat 24944361  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 465 - 505
Target Start/End: Original strand, 3455 - 3495
Alignment:
Q  465 aatatataatgtatttaaaatgattatgttaaatgtgacaa 505  Q
    |||| |||||||||| ||||||||| |||||||||||||||    
T  3455 aatacataatgtattcaaaatgattctgttaaatgtgacaa 3495  T

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