View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_low_4 (Length: 607)
Name: NF13896_low_4
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_low_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 53020983 - 53020576
Alignment:
| Q |
17 |
atgtataggtgtcgtgtttttggataaaactagttattgtagcctacataattcagccttccaaacgttcttttagtccacatagtttatagtggtcgga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53020983 |
atgtataggtgtcgtgtttttggataaaactagttattgtagcctacataattcagccttccaaacgttcttttattccacatagtttatagtggtcgga |
53020884 |
T |
|
| Q |
117 |
agtttgctctatactcccttcaaaatgctcacatgccccttaagtttccttaaatatcccttttaaacagtaccgattcatgtggttcgggtgttaagca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53020883 |
agtttgctctatactcccttcaaaatgctcacatgccccttaagtttccttaaatatcccttttaaacaataccgattcatgtggttcgggtgttaagca |
53020784 |
T |
|
| Q |
217 |
tcgattcttttgagggatacgcacaaatcttggattgagacttgaaatctaatacgcttgatgcacgtaattgcaatgtgcaaagttgtatcatttggag |
316 |
Q |
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| T |
53020783 |
tcgattcttttgagggatacgcacaaatcttggattgagacttgaaatctaatacgcttgatgcacgtaattgcaatgtacaaagttgtatcatttggag |
53020684 |
T |
|
| Q |
317 |
tgcacaaa-----------attgtaccattaagatcttgtgccattcatgcacaaaattcatacatactcgatttgtccttacaaagcaaggagatgttg |
405 |
Q |
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| T |
53020683 |
tgcacaaaattgatgcaaaattgtaccattaagatcttgtgccattcatgcacaaaattcatacatactcgatttgtccgtacaaagcaaggagatgttg |
53020584 |
T |
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| Q |
406 |
tagtggtt |
413 |
Q |
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|||||||| |
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| T |
53020583 |
tagtggtt |
53020576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 398 - 588
Target Start/End: Complemental strand, 53020562 - 53020372
Alignment:
| Q |
398 |
agatgttgtagtggttgtgcagggtgttcgagcgtggggcaaggcaattttctgtgacggagtagaatggttcctgaaagaacgttagcaatccaacgct |
497 |
Q |
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|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53020562 |
agatgtcgtagtagttgtgcggggtgttcgagcgtggggcaaggcaattttctgtgacggagtagaatggttcttgaaagaacgttagcaatccaacgct |
53020463 |
T |
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| Q |
498 |
caagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtaccctaagcatggtgctggatcacgattatataggt |
588 |
Q |
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| T |
53020462 |
caagtcagtatcacaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtaccctaagcgtggtgctggatcacgattatataggt |
53020372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 555
Target Start/End: Complemental strand, 23609842 - 23609750
Alignment:
| Q |
461 |
agaatggttcctgaaagaacgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtacc |
555 |
Q |
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| T |
23609842 |
agaatggtgcttgaaggcacgtcagcactccaacgctcaagtcagtatcagaaa--gtgtggatttgtgtgaaaaagtgatgaatgaatcatacc |
23609750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 507
Target Start/End: Complemental strand, 14602099 - 14602071
Alignment:
| Q |
479 |
acgttagcaatccaacgctcaagtcagta |
507 |
Q |
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| T |
14602099 |
acgttagcaatccaacgctcaagtcagta |
14602071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 553
Target Start/End: Complemental strand, 7507954 - 7507880
Alignment:
| Q |
479 |
acgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgta |
553 |
Q |
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| T |
7507954 |
acgttaacactccaacactcaagttggtatcataaaagtgttggatttgtgcaaaaaagtggagaatgaatcgta |
7507880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 555
Target Start/End: Complemental strand, 31282693 - 31282590
Alignment:
| Q |
452 |
tgacggagtagaatggttcctgaaagaacgttagcaatccaacgctcaagtcagtatcagaaaagaggtggattt-gtgcagaaaagtggtgaatgaatc |
550 |
Q |
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|||| ||| |||||||| |||| ||| ||||||||| ||| | |||||| |||||| ||||| ||||||||||| || | |||||||||||||||||| |
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| T |
31282693 |
tgacagagaagaatggtgcctgcaaggacgttagcactccgatgctcaattcagtaagagaaa-gaggtggattttgtactaaaaagtggtgaatgaatc |
31282595 |
T |
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| Q |
551 |
gtacc |
555 |
Q |
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| T |
31282594 |
gtacc |
31282590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 2837314 - 2837258
Alignment:
| Q |
491 |
caacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaa |
548 |
Q |
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| T |
2837314 |
caacgctcaagtaagtatca-aaaagaggtggatttgtgcgaaaaggtggtgaatgaa |
2837258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 555
Target Start/End: Complemental strand, 26713619 - 26713545
Alignment:
| Q |
479 |
acgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaaagtggtgaatgaatcgtacc |
555 |
Q |
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| T |
26713619 |
acgttagcactccaacactcaagtcagtattag-agagaggtgggtttgtgca-aaaaatggtgaatgaattgtacc |
26713545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 507
Target Start/End: Original strand, 215279 - 215307
Alignment:
| Q |
479 |
acgttagcaatccaacgctcaagtcagta |
507 |
Q |
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| T |
215279 |
acgttagcaatccaacgctcaagtcagta |
215307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 535
Target Start/End: Original strand, 27803375 - 27803430
Alignment:
| Q |
479 |
acgttagcaatccaacgctcaagtcagtatcagaaaagaggtggatttgtgcagaaa |
535 |
Q |
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||||||||| ||||||||||||||||||||| | |||||||||| | | |||||||| |
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| T |
27803375 |
acgttagcactccaacgctcaagtcagtatctg-aaagaggtggttatatgcagaaa |
27803430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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