View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13896_low_5 (Length: 552)

Name: NF13896_low_5
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13896_low_5
NF13896_low_5
[»] chr7 (2 HSPs)
chr7 (16-534)||(44501079-44501597)
chr7 (84-172)||(32413624-32413712)
[»] chr3 (12 HSPs)
chr3 (61-266)||(45870386-45870593)
chr3 (79-422)||(20994809-20995154)
chr3 (79-422)||(20981650-20981995)
chr3 (202-257)||(20977477-20977532)
chr3 (63-275)||(45856777-45856991)
chr3 (202-281)||(2996371-2996450)
chr3 (117-172)||(25601740-25601795)
chr3 (202-355)||(20949493-20949649)
chr3 (205-331)||(20948805-20948934)
chr3 (82-140)||(778229-778287)
chr3 (84-165)||(25596902-25596983)
chr3 (207-275)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (61-269)||(3978077-3978287)
[»] chr5 (4 HSPs)
chr5 (75-491)||(7894982-7895403)
chr5 (61-291)||(38142015-38142247)
chr5 (292-516)||(7976459-7976683)
chr5 (61-113)||(7976853-7976905)
[»] chr6 (7 HSPs)
chr6 (63-173)||(33844279-33844389)
chr6 (115-172)||(33840288-33840345)
chr6 (84-172)||(7115536-7115624)
chr6 (84-172)||(7120608-7120696)
chr6 (84-172)||(7124012-7124100)
chr6 (84-140)||(7140758-7140814)
chr6 (84-140)||(8680372-8680428)
[»] chr2 (1 HSPs)
chr2 (85-173)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Complemental strand, 44501597 - 44501079
Alignment:
Q  16 agaagaaattaaaactcactgagagtgtaagtaaagactgacttggcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaa 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501597 agaagaaattaaaactcactgagagtgtaagtaaagaccgacttggcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaa 44501498  T
Q  116 cgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcacttatagcattcttcagattttcacacttacaagatatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44501497 cgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcacttatagcattcttcagattttcacactttcaagatatt 44501398  T
Q  216 caataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttcagccataatggtcgcttggagtttcacctactc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44501397 caataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttcagccataatggttgcttggagtttcacctactc 44501298  T
Q  316 aaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggacttagtgtccttgctgacaatgcacaaattccgcctagcatattttcatctc 415  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44501297 aaaaggattgtgaattgtgctatttcacacatagtccagcggtcaggacttagtgtccatgctgacaatgcacaaattccgcctagcatattttcatctc 44501198  T
Q  416 agactttgacatattttaagcttggtatttactctggtgtaggtcatgaaacaatgtttccgaaatctctcaattttcctgcattaaccaatttgcaact 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501197 agactttgacatattttaagcttggtatttactctggtgtaggtcatgaaacaatgtttccgaaatctctcaattttcctgcattaaccaatttgcaact 44501098  T
Q  516 atggcattttgcattttct 534  Q
    |||||||||||||||||||    
T  44501097 atggcattttgcattttct 44501079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 32413624 - 32413712
Alignment:
Q  84 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 172  Q
    ||||||||||| || | ||||||  ||||| |||| ||||| ||||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  32413624 cttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 266
Target Start/End: Complemental strand, 45870593 - 45870386
Alignment:
Q  61 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 160  Q
    ||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| |||| ||||| |||||| |||| || || ||||  | |||||||||    
T  45870593 gcgacctacctgactgtgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatctttg 45870494  T
Q  161 gaaacgtcttcctgcacttata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctct 258  Q
    ||||||||||||| | ||||||  |||||||   || ||||  ||||| ||||||||||  | ||| || |||| |||||||||||| |  |||||||||    
T  45870493 gaaacgtcttccttctcttatattgcattctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgggattcctct 45870394  T
Q  259 atctcact 266  Q
    ||||||||    
T  45870393 atctcact 45870386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 79 - 422
Target Start/End: Complemental strand, 20995154 - 20994809
Alignment:
Q  79 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 178  Q
    ||||||||||||| || || ||| ||||  ||||| |||||||||| |||||  |||| ||||| | ||  |||||||||||||||||||||||||| ||    
T  20995154 ttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcctgctct 20995055  T
Q  179 t--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactc-t 275  Q
    |  || ||||  |  ||| ||||  |||| |||||||||||  | ||||||||||||| ||||||||||||  ||||||||||||||||| ||  ||| |    
T  20995054 tacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctctt 20994955  T
Q  276 caatttcagc--cataatggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggacttagtgtc- 372  Q
     | |||||||  |||||||| ||||| |||  |||   ||| |||| |||||||||||  ||||||| |||||| ||||||| || |  |||| |||||     
T  20994954 gattttcagcgtcataatggccgctttgagcctca---acttaaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtca 20994858  T
Q  373 cttgctgacaatgcacaaattccgcctagcatattttcatctcagacttt 422  Q
    |||| ||||| ||| |||||||| | |||| ||||||||| |||| ||||    
T  20994857 cttg-tgacattgcgcaaattcctcatagcttattttcatttcagccttt 20994809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 422
Target Start/End: Complemental strand, 20981995 - 20981650
Alignment:
Q  79 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 178  Q
    ||||||||||||| || || ||| ||||  ||||| | |||||||| |||||  |||| ||||| | ||  || ||||||||||||||||||||||| ||    
T  20981995 ttatccttcacattctctcctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcctgctct 20981896  T
Q  179 tata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactc-t 275  Q
    || |  ||||  |  ||| ||||  | || |||||||||||  | ||||||||||||| ||||||||||||  ||||||||||||||||| ||  ||| |    
T  20981895 tacattgcataatagagactttcgtaatttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctctt 20981796  T
Q  276 caatttcagc--cataatggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggacttagtgtcc 373  Q
     | |||||||  |||||||| ||||| |||  |||   ||| |||| |||||||||||  ||||||| |||||| ||||||| || |  |||| |||||     
T  20981795 gattttcagcgtcataatggccgctttgagcctca---acttaaaaagattgtgaattacgctatttcacacaatgtccagcggttacaactttgtgtca 20981699  T
Q  374 ttgctgacaatgcacaaattccgcctagcatattttcatctcagacttt 422  Q
     |  ||||| ||| |||||||| | |||| ||||||||| |||| ||||    
T  20981698 attgtgacattgcgcaaattcctcatagcctattttcatttcagccttt 20981650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 20977477 - 20977532
Alignment:
Q  202 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctc 257  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||    
T  20977477 acttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctc 20977532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 275
Target Start/End: Complemental strand, 45856991 - 45856777
Alignment:
Q  63 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 162  Q
    ||||||| |||||  |||||||| ||||||||||||||| |||| || ||| |||| |||   ||||||||||||||||| ||||  |||||||| ||||    
T  45856991 gacttacatgactatattatcctccacatactgtcttttctgaacgctaaagacgcggttggaacttgcattttgtccccaagatacaaggatctctgga 45856892  T
Q  163 aacgtcttcctgcactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctat 260  Q
    |||  |||||    |||  || |  ||| |  || ||||  |||| |||||||||||  || || ||||||||||||||||||||||  |||||||||||    
T  45856891 aacaacttccaaatcttacattgtgttcctatgactttcgaactttcaagatattcaccaactttgtgtctaaggttttatctcttcgtgattcctctat 45856792  T
Q  261 ctcactacacactct 275  Q
    | |||| ||| ||||    
T  45856791 cgcactccacgctct 45856777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 2996450 - 2996371
Alignment:
Q  202 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaattt 281  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||  |||||||||||| ||| | || |||||| ||||    
T  2996450 acttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctatttcattgcagactctcgattt 2996371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 25601740 - 25601795
Alignment:
Q  117 gctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 172  Q
    |||||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||    
T  25601740 gctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 25601795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 355
Target Start/End: Original strand, 20949493 - 20949649
Alignment:
Q  202 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactc-tcaatttcagc--cataatggtcgct 298  Q
    ||||||||||||||||  ||||||||||||||  |||||||||||   |||||||||||| || || |  ||| | | ||| |||  |||| |||||| |    
T  20949493 acttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcacattataagctcttgattttaagcatcatattggtcgtt 20949592  T
Q  299 tggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagc 355  Q
    | |||  |||| |||||||||||||||||||||  ||||||  |||||| |||||||    
T  20949593 tagagcctcacatactcaaaaggattgtgaattacgctattaaacacaatgtccagc 20949649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 20948805 - 20948934
Alignment:
Q  205 tacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttca---gccataatggtcgcttgg 301  Q
    |||||||||||||  || || ||||||||| ||||||||||||  ||| |||||||| || ||||||||||  |||| |   | |||| || |||||| |    
T  20948805 tacaagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactcttgattttaagcgtcatattgttcgcttag 20948904  T
Q  302 agtttcacctactcaaaaggattgtgaatt 331  Q
    ||  |||| |||| ||||||||||||||||    
T  20948905 agcctcacatacttaaaaggattgtgaatt 20948934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 778287 - 778229
Alignment:
Q  82 tccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 140  Q
    ||||||||||||| ||||||||||| |||||| | || || || |||||||||||||||    
T  778287 tccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtcc 778229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 25596902 - 25596983
Alignment:
Q  84 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaac 165  Q
    ||||||||  |||| ||||||||| ||||  | || ||||| ||||||||||||||  | ||||||||| ||||||||||||    
T  25596902 cttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaac 25596983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 45881873 - 45881805
Alignment:
Q  207 caagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct 275  Q
    |||||||||||  ||||| ||||| ||||||||||||||    |||||||||||| |||| ||||||||    
T  45881873 caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactct 45881805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 269
Target Start/End: Original strand, 3978077 - 3978287
Alignment:
Q  61 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 160  Q
    |||||||||||||  ||||||| ||||||||||| || ||||| ||  ||||  |||| ||||| |||||| |||| ||| | ||||  |||||||||||    
T  3978077 gcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagatataaggatctttg 3978176  T
Q  161 gaaacgtcttcctgcactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctct 258  Q
    ||||||||||||| | |||  || |||||||||||| |||    ||||||||| |||||  | ||| |||||||| ||||||| ||||| ||||||||||    
T  3978177 gaaacgtcttcctactcttacattgcattcttcagactttggagcttacaagaaattcaccagattagtgtctaaagttttatttcttcgcgattcctct 3978276  T
Q  259 atctcactaca 269  Q
    ||| |||||||    
T  3978277 atcgcactaca 3978287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 75 - 491
Target Start/End: Original strand, 7894982 - 7895403
Alignment:
Q  75 tgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctg 174  Q
    ||||||||||||||||| || || ||||||||||||||| | || ||||| ||||||||||||||   |||||||||| |||| ||||||| ||| || |    
T  7894982 tgcattatccttcacattctttcctttttgaatgccaaacaagccgttca-acttgcattttgtctatcagatggaagaatctctggaaacttctacccg 7895080  T
Q  175 cactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacac 272  Q
    | |||  ||   ||||| |||||||||    ||||| || |||||  ||||| |||||||||||||||||||||| | |||||||| ||  ||| ||  |    
T  7895081 ctcttagattcgattctacagattttcgattttacacgaaattcacaaaatttgtgtctaaggttttatctcttcgcaattcctctgtcaaactgcaggc 7895180  T
Q  273 tc-tcaattt--cagccataatggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggacttagt 369  Q
    || | |||||   ||| ||  ||||||||| |||  |||| |||||||||| |||||||||| |||||||| |||||| |||||  | | ||||||| ||    
T  7895181 tcttgaatttaatagcaatgctggtcgcttagagcctcacttactcaaaagaattgtgaattatgctatttcacacaatgtccaattattaggactttgt 7895280  T
Q  370 gtcct-tgctgacaatgcacaaattccgcctagcatattttcatctcagactttgacatattttaagcttggta-tttactctggtgtaggtcatgaaac 467  Q
     |||| | |||| | || ||| |||   || ||||| ||||||| |||| |||| ||| || |||||||| ||| ||||| ||  || ||||||||||||    
T  7895281 -tcctatactgaaattggacacattttaccaagcatgttttcatgtcagtctttaacacatcttaagctttgtactttaccctaatggaggtcatgaaac 7895379  T
Q  468 aatgtttccgaaatctctcaattt 491  Q
    | ||||||| |||||| |||||||    
T  7895380 actgtttccaaaatctttcaattt 7895403  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 291
Target Start/End: Complemental strand, 38142247 - 38142015
Alignment:
Q  61 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 160  Q
    ||||||||||||||||  |||||||||||||||| || |||||||| || ||| | || |||   ||||  ||| |||||   ||||||| |||||| ||    
T  38142247 gcgacttacctgactgtgttatccttcacatactctcctttttgaacgctaaacaggcagttacaacttcaattctgtccttaagatggagggatctatg 38142148  T
Q  161 gaaacgtcttcctgcacttata--gcattcttcagattttcacact-tacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctc 257  Q
    ||||| ||||||||| ||||||  | |||||||||| ||||  ||| |||  ||||||||| |||||||||  || ||||||| ||||||  ||||||||    
T  38142147 gaaacttcttcctgctcttatattggattcttcagactttcgaactatacc-gatattcaacaaattcgtgcatagggttttaactcttcgtgattcctc 38142049  T
Q  258 tatctcactacacactctcaatttcagccataat 291  Q
    | || ||||  || ||||||||||||| ||||||    
T  38142048 tctcgcactgaactctctcaatttcagacataat 38142015  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 516
Target Start/End: Complemental strand, 7976683 - 7976459
Alignment:
Q  292 ggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggacttagtgtccttgctgacaatgcacaaa 391  Q
    |||||||| |||  |||| ||||||||||||||||||||| |||||||| |||||| ||||||| || ||||||| |  ||  | |||    |||||| |    
T  7976683 ggtcgcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggactttggttctatactgttcttgcacata 7976584  T
Q  392 ttccgcctagcatattttcatctcagactttgacatattttaagcttggtatttactctggtgtaggtcatgaaacaatgtttccgaaatctctcaattt 491  Q
    |||| || |  || ||||||| ||| ||||| ||| || ||||||||  || |||| ||  || ||||||||||||| ||||||| |||||| |||||||    
T  7976583 ttccaccgacgatgttttcatgtcatactttaacacatcttaagctttctacttaccctaatggaggtcatgaaacattgtttccaaaatctttcaattt 7976484  T
Q  492 tcctgcattaaccaatttgcaacta 516  Q
     || ||| |||| |  |||||||||    
T  7976483 gccggcactaactagcttgcaacta 7976459  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 7976905 - 7976853
Alignment:
Q  61 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaa 113  Q
    |||||||||| || ||||||||||||||||| || || |||||||| ||||||    
T  7976905 gcgacttacccgaatgcattatccttcacattctctcctttttgaacgccaaa 7976853  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 33844389 - 33844279
Alignment:
Q  63 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 162  Q
    |||||||| ||||||||| |  || ||||  |||| ||||||||  || ||||||| ||||| ||||||||||||||| ||||||||||  |||| ||||    
T  33844389 gacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccagatggaaacatctctgga 33844290  T
Q  163 aacgtcttcct 173  Q
    ||||| |||||    
T  33844289 aacgtattcct 33844279  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 33840345 - 33840288
Alignment:
Q  115 acgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 172  Q
    |||||||||  ||||||||||||||| ||||||||||  |||||||||||||| ||||    
T  33840345 acgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 33840288  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 7115624 - 7115536
Alignment:
Q  84 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 172  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7115536  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 7120696 - 7120608
Alignment:
Q  84 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 172  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7120608  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 7124100 - 7124012
Alignment:
Q  84 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 172  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7124012  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 7140814 - 7140758
Alignment:
Q  84 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 140  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 7140758  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 8680428 - 8680372
Alignment:
Q  84 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 140  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 8680372  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 43864136 - 43864048
Alignment:
Q  85 ttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcct 173  Q
    ||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||   |||||||   ||||||||||  ||||||||    
T  43864136 ttcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcct 43864048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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