View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13897_high_2 (Length: 579)

Name: NF13897_high_2
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13897_high_2
NF13897_high_2
[»] chr4 (7 HSPs)
chr4 (22-439)||(32000831-32001248)
chr4 (22-439)||(31941872-31942289)
chr4 (244-439)||(32003917-32004112)
chr4 (484-579)||(31942334-31942429)
chr4 (484-579)||(32001293-32001388)
chr4 (492-572)||(32004137-32004220)
chr4 (76-145)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (78-145)||(2950124-2950191)
chr7 (229-277)||(28944732-28944780)
[»] chr5 (1 HSPs)
chr5 (42-170)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (76-131)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (76-113)||(20732617-20732654)
chr3 (76-113)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (79-115)||(9622097-9622133)
chr8 (79-109)||(7195709-7195739)
chr8 (76-121)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (69-108)||(27632581-27632620)
chr1 (57-112)||(45594286-45594341)
[»] chr6 (1 HSPs)
chr6 (228-286)||(3912013-3912071)


Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 22 - 439
Target Start/End: Original strand, 32000831 - 32001248
Alignment:
Q  22 gttatgattgattatgtgcacacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000831 gttatgattgattatgtgcacacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaa 32000930  T
Q  122 gaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000931 gaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagct 32001030  T
Q  222 aacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001031 aacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagt 32001130  T
Q  322 ttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001131 ttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagc 32001230  T
Q  422 atggcaaagttcatggtc 439  Q
    ||||||||||||||||||    
T  32001231 atggcaaagttcatggtc 32001248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 22 - 439
Target Start/End: Original strand, 31941872 - 31942289
Alignment:
Q  22 gttatgattgattatgtgcacacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941872 gttatgattgattatgtgcacacagatggtcagcaatagcagctcaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaa 31941971  T
Q  122 gaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941972 gaaaagactaacaagaatgggaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagct 31942071  T
Q  222 aacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942072 aacctcagtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagt 31942171  T
Q  322 ttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942172 ttgaatcctccaaaccacagccacctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagc 31942271  T
Q  422 atggcaaagttcatggtc 439  Q
    ||||||||||||||||||    
T  31942272 atggcaaagttcatggtc 31942289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 32003917 - 32004112
Alignment:
Q  244 gggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaaccacagcc 343  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| | |||||||||||||||||||| |     
T  32003917 gggaaagtgctcgtttggaagcaaaagcaagacttgttagagaaactaacaaaataaaagttcaaagacaactttaatttgaatcctccaaaccacaaca 32004016  T
Q  344 acctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc 439  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| | || |||||||||||| ||||||||| |||||||||||||    
T  32004017 acctgcaagacttttcctcaacaaaatcacaccactcattcaaccttcacttcccctttctcttgatattctaaaagcatggtaaagttcatggtc 32004112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 484 - 579
Target Start/End: Original strand, 31942334 - 31942429
Alignment:
Q  484 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942334 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 31942429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 484 - 579
Target Start/End: Original strand, 32001293 - 32001388
Alignment:
Q  484 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001293 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc 32001388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 492 - 572
Target Start/End: Original strand, 32004137 - 32004220
Alignment:
Q  492 atgtatgctatgatgttatccaatgatga---tcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcct 572  Q
    ||||||| |||||||| ||||||||||||   |||||||||||| ||||||||||||||||| || ||||||||| ||||||||    
T  32004137 atgtatgttatgatgtcatccaatgatgaaaatcttgaatctcctacatccactttgaacttcccgggaacaaccctgcttcct 32004220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 36246545 - 36246614
Alignment:
Q  76 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 145  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  36246545 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 36246614  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 2950124 - 2950191
Alignment:
Q  78 agaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 145  Q
    |||||||| ||||||||||||||||| ||||||||||| || ||||||||| |||| | |||||||||    
T  2950124 agaacagataatgaaatcaagaactattggaacacacatcttaagaaaagattaaccaaaatgggaat 2950191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 28944780 - 28944732
Alignment:
Q  229 gtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagact 277  Q
    |||||||||||||||||||||||||  |  | |||||||||||||||||    
T  28944780 gtcacatggctcaatgggagagtgcaaggcttgaagcagaagcaagact 28944732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 18478948 - 18479076
Alignment:
Q  42 cacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgg 141  Q
    |||||||||||  |||||||||| |  || ||||| |||||||| |||||||| |||||  | |||||||   || ||||||||||||| |  |||||||    
T  18478948 cacagatggtccacaatagcagctctcctgccaaggagaacagataatgaaataaagaatcattggaacattaacatcaagaaaagactcatcagaatgg 18479047  T
Q  142 gaatagacccaacaactcacaaaccaaaa 170  Q
    | ||||| || || |||||||||||||||    
T  18479048 ggatagatcccaccactcacaaaccaaaa 18479076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 37881361 - 37881306
Alignment:
Q  76 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 131  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  37881361 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 37881306  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 20732654 - 20732617
Alignment:
Q  76 gaagaacagacaatgaaatcaagaactactggaacaca 113  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20732654 gaagaacagacaatgaaataaagaactactggaacaca 20732617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 20740390 - 20740353
Alignment:
Q  76 gaagaacagacaatgaaatcaagaactactggaacaca 113  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20740390 gaagaacagacaatgaaataaagaactactggaacaca 20740353  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 9622097 - 9622133
Alignment:
Q  79 gaacagacaatgaaatcaagaactactggaacacaca 115  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9622097 gaacagacaatgaaataaagaactactggaacacaca 9622133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 109
Target Start/End: Original strand, 7195709 - 7195739
Alignment:
Q  79 gaacagacaatgaaatcaagaactactggaa 109  Q
    |||||||||||||||||||||||||||||||    
T  7195709 gaacagacaatgaaatcaagaactactggaa 7195739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 39916910 - 39916955
Alignment:
Q  76 gaagaacagacaatgaaatcaagaactactggaacacacacctcaa 121  Q
    |||||||||||||||| ||||||||||| |||||||| ||| ||||    
T  39916910 gaagaacagacaatgagatcaagaactattggaacactcacatcaa 39916955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 27632620 - 27632581
Alignment:
Q  69 cttccaagaagaacagacaatgaaatcaagaactactgga 108  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  27632620 cttccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 45594341 - 45594286
Alignment:
Q  57 atagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacac 112  Q
    |||||||| ||||| ||| |||||||||||||||| || |||||||| ||||||||    
T  45594341 atagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 3912013 - 3912071
Alignment:
Q  228 agtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagaga 286  Q
    |||||||||||||||||||| |||||| |  | ||||| ||||| ||||||||||||||    
T  3912013 agtcacatggctcaatgggaaagtgctagacttgaagctgaagctagacttgttagaga 3912071  T

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