View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13897_high_20 (Length: 214)

Name: NF13897_high_20
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13897_high_20
NF13897_high_20
[»] chr2 (4 HSPs)
chr2 (88-194)||(42275841-42275947)
chr2 (129-194)||(42278101-42278166)
chr2 (81-178)||(39816322-39816419)
chr2 (78-152)||(31488900-31488974)
[»] chr4 (4 HSPs)
chr4 (88-194)||(13776223-13776329)
chr4 (126-194)||(13773963-13774031)
chr4 (78-195)||(8750859-8750976)
chr4 (82-150)||(8739189-8739257)
[»] chr3 (2 HSPs)
chr3 (88-194)||(4532908-4533014)
chr3 (127-194)||(4530648-4530715)
[»] chr7 (7 HSPs)
chr7 (88-194)||(8731479-8731585)
chr7 (127-194)||(18395140-18395207)
chr7 (127-192)||(28610546-28610611)
chr7 (91-151)||(19788855-19788915)
chr7 (141-190)||(24040414-24040463)
chr7 (90-130)||(16497227-16497267)
chr7 (142-178)||(21769388-21769424)
[»] chr1 (5 HSPs)
chr1 (88-194)||(10911126-10911232)
chr1 (127-194)||(10908921-10908988)
chr1 (126-194)||(13011558-13011626)
chr1 (78-136)||(4820897-4820955)
chr1 (78-136)||(4832697-4832755)
[»] chr5 (2 HSPs)
chr5 (89-152)||(22600656-22600719)
chr5 (89-152)||(11850284-11850347)
[»] chr8 (1 HSPs)
chr8 (78-152)||(36377559-36377633)
[»] scaffold0050 (1 HSPs)
scaffold0050 (78-157)||(31385-31464)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 42275947 - 42275841
Alignment:
Q  88 tcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 187  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42275947 tcttgactcgaggatgagtctcttccaacccgtggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 42275848  T
Q  188 ttcaaga 194  Q
    |||||||    
T  42275847 ttcaaga 42275841  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 42278166 - 42278101
Alignment:
Q  129 atagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42278166 atagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 42278101  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 39816419 - 39816322
Alignment:
Q  81 aagaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgt 178  Q
    |||||| ||||| |||||||| ||||||| ||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  39816419 aagaaaatcttgtctcgaggacgagtctcatccaacccggagagaatgatagaaaatgatggagaataatatagaacattatggaactttcaagatgt 39816322  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 31488900 - 31488974
Alignment:
Q  78 aagaagaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatat 152  Q
    |||||||||  ||||||||||||| ||||||||||||| |||| ||||||||||||||||  || ||||||||||    
T  31488900 aagaagaaaagcttgactcgaggacgagtctcttccaacccggagagaatgatagagaatggtgaagaataatat 31488974  T

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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 13776223 - 13776329
Alignment:
Q  88 tcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 187  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13776223 tcttgactcgaggacgagtctcttccaacccggggagaatgatagagaattatggagaataatatagaacattatggaactttcaagatgtcgaagaact 13776322  T
Q  188 ttcaaga 194  Q
    |||||||    
T  13776323 ttcaaga 13776329  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 13773963 - 13774031
Alignment:
Q  126 atgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 194  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13773963 atgatagagaattatggagaataatatagaacattatgggactttcaagatgtcgaagaactttcaaga 13774031  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 8750976 - 8750859
Alignment:
Q  78 aagaagaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatg 177  Q
    ||||||||| | |||||||| ||| ||||||||||||| |||  || |||| || ||||| ||| |||||||||||||| ||||||  |||||||| |||    
T  8750976 aagaagaaaatattgactcggggacgagtctcttccaacccgaagaaaatgctaaagaatgatgaagaataatatagaatattatgacacttttaaaatg 8750877  T
Q  178 tcgaagaactttcaagat 195  Q
    | ||||||||||||||||    
T  8750876 tggaagaactttcaagat 8750859  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 8739189 - 8739257
Alignment:
Q  82 agaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataat 150  Q
    ||||| ||||||||| |||| ||||||| ||||| | | ||||||||||||||||| ||| ||||||||    
T  8739189 agaaaatcttgactctaggacgagtctcatccaacctgaggagaatgatagagaatgatgaagaataat 8739257  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 4532908 - 4533014
Alignment:
Q  88 tcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 187  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4532908 tcttgactcgaggacgagtctcttccaacccggggagaatgatagagaattatggagaataatatagaacattatggaactttcaagatgtcgaagaact 4533007  T
Q  188 ttcaaga 194  Q
    |||||||    
T  4533008 ttcaaga 4533014  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 4530648 - 4530715
Alignment:
Q  127 tgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 194  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4530648 tgatagagaattatggagaataatatagaacattatggaactttcaagatgtcgaagaactttcaaga 4530715  T

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Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 8731585 - 8731479
Alignment:
Q  88 tcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 187  Q
    |||||||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8731585 tcttgactcgaggacgagtctcttccaacctgtggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 8731486  T
Q  188 ttcaaga 194  Q
    |||||||    
T  8731485 ttcaaga 8731479  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 18395140 - 18395207
Alignment:
Q  127 tgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 194  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18395140 tgatagagaattatggaggataatatagaacattatggaactttcaagatgtcgaagaactttcaaga 18395207  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 28610611 - 28610546
Alignment:
Q  127 tgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaa 192  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||    
T  28610611 tgatagagaattatggagaagaatatataacattatggaactttcaagatgtcgaagagctttcaa 28610546  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 19788855 - 19788915
Alignment:
Q  91 tgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataata 151  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||| ||  |||||||||    
T  19788855 tgactcgaggacgagtctcttccaacctggggagaatgatagagaatgatcaagaataata 19788915  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 24040414 - 24040463
Alignment:
Q  141 ggagaataatatagaacattatggaacttttaagatgtcgaagaactttc 190  Q
    ||||||| ||| |||| |||||| |||||||||||||| |||||||||||    
T  24040414 ggagaatcatagagaatattatgaaacttttaagatgtggaagaactttc 24040463  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 16497267 - 16497227
Alignment:
Q  90 ttgactcgaggatgagtctcttccaatccggggagaatgat 130  Q
    |||||||||||| |||||| |||||| ||||||||||||||    
T  16497267 ttgactcgaggacgagtcttttccaacccggggagaatgat 16497227  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 21769424 - 21769388
Alignment:
Q  142 gagaataatatagaacattatggaacttttaagatgt 178  Q
    |||||| |||||||||||||||||||||| |||||||    
T  21769424 gagaatgatatagaacattatggaactttcaagatgt 21769388  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 10911126 - 10911232
Alignment:
Q  88 tcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 187  Q
    |||||||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10911126 tcttgactcgaggacgagtctcttccaacctgtggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaact 10911225  T
Q  188 ttcaaga 194  Q
    |||||||    
T  10911226 ttcaaga 10911232  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 10908921 - 10908988
Alignment:
Q  127 tgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10908921 tgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 10908988  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 13011558 - 13011626
Alignment:
Q  126 atgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaaga 194  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13011558 atgatagagaattatggagaataatatagaacattatgaaacttttaagatgtcgaagaactttcaaga 13011626  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 4820897 - 4820955
Alignment:
Q  78 aagaagaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaa 136  Q
    |||||||||||||||||||||| | ||||||||||||| || |||||||||||| ||||    
T  4820897 aagaagaaattcttgactcgagcaagagtctcttccaacccagggagaatgataaagaa 4820955  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 4832697 - 4832755
Alignment:
Q  78 aagaagaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaa 136  Q
    |||||||||||||||||||||| | ||||||||||||| || |||||||||||| ||||    
T  4832697 aagaagaaattcttgactcgagcaagagtctcttccaacccagggagaatgataaagaa 4832755  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 22600656 - 22600719
Alignment:
Q  89 cttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatat 152  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  22600656 cttgactcgaggacgagtctcttccaacccggggagaatgatagagaatgatgaagaataatat 22600719  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 11850347 - 11850284
Alignment:
Q  89 cttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatat 152  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||  || ||||||||||    
T  11850347 cttgactcgaggacgagtctcttccaacccggggagaatgatagagaatggtgaagaataatat 11850284  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 36377633 - 36377559
Alignment:
Q  78 aagaagaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatat 152  Q
    |||||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||  || ||||||||||    
T  36377633 aagaagaaaagcttgactcgaggacgagtctcttccaacccggggagaatgatagagaatggtgaagaataatat 36377559  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 31385 - 31464
Alignment:
Q  78 aagaagaaattcttgactcgaggatgagtctcttccaatccggggagaatgatagagaattatggagaataatatagaac 157  Q
    |||||| || ||||||||||| || |||||||||| || | ||||||||||||| ||||| ||| |||||||||| ||||    
T  31385 aagaaggaaatcttgactcgatgacgagtctcttcaaacctggggagaatgataaagaatgatgaagaataatatggaac 31464  T

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