View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13897_high_9 (Length: 389)

Name: NF13897_high_9
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13897_high_9
NF13897_high_9
[»] chr4 (1 HSPs)
chr4 (1-389)||(26325141-26325529)
[»] chr3 (2 HSPs)
chr3 (4-163)||(54530325-54530484)
chr3 (234-374)||(54530542-54530682)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 26325141 - 26325529
Alignment:
Q  1 tgacatccaagtctatacagcgtaagcaaatcagtaaaactcgcttcagagatcttggagaaggtggaatctcaatcaaaggatcgactagctcgtcgct 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26325141 tgacatccaagtctatacagcgtaggcaaatcagtaaaactcgcttcagagctcttggagaaggtggagtctcaatcaaaggatcgactagctcgtcgct 26325240  T
Q  101 gcgatgacttgatgccgttgccttaaaccaatcaaccaaattcatctgaagcgcatcaaacaagtacaaaggttagactccaatatgttcatgaagtgca 200  Q
    |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26325241 gcgacgacttgataccattgccttaaaccaatcaaccaaattcatctgaagcgcatcaaacaaatacaaaggttagactccaatatgttcatgaagtgca 26325340  T
Q  201 caaattaaacatctcaacaaaattcctgaaataacctctccaggtggtcttgaataatcaatagggcttcttcctgtgattatttccatgagtagaactc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26325341 caaattaaacatctcaacaaaattcctgaaataacctctccaggtggtcttgaataatcaatagggcttcttcctgtgattatttccatgagtagaactc 26325440  T
Q  301 caaaactataaacatcgctacgctcattaagcatacctgtgcttgcgtactcaggcgaaacatatctgcagaaatttattgttaagaat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26325441 caaaactataaacatcgctacgctcattaagcatacctgtgcttgcgtactcaggcgaaacatatctgcataaatttattgttaagaat 26325529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 54530325 - 54530484
Alignment:
Q  4 catccaagtctatacagcgtaagcaaatcagtaaaactcgcttcagagatcttggagaaggtggaatctcaatcaaaggatcgactagctcgtcgctgcg 103  Q
    ||||||| ||||||||||| | ||||| ||||||| ||||||||| |||||||||||||||  ||||||| ||||||||||| |||||||| || |  ||    
T  54530325 catccaaatctatacagcgaaggcaaaccagtaaagctcgcttcaaagatcttggagaaggctgaatctcgatcaaaggatcaactagctcctcaccacg 54530424  T
Q  104 atgacttgatgccgttgccttaaaccaatcaaccaaattcatctgaagcgcatcaaacaa 163  Q
    | |||||| | || || ||||||||||||||||||| ||||||||||||  |||||||||    
T  54530425 acgacttgctaccattcccttaaaccaatcaaccaagttcatctgaagcaaatcaaacaa 54530484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 234 - 374
Target Start/End: Original strand, 54530542 - 54530682
Alignment:
Q  234 acctctccaggtggtcttgaataatcaatagggcttcttcctgtgattatttccatgagtagaactccaaaactataaacatcgctacgctcattaagca 333  Q
    |||||| |||||| ||| ||||||||||| || ||||||||||| | ||  |||||||||||||  ||||||||||| |||||||| | |||||||||||    
T  54530542 acctctgcaggtgctctagaataatcaatgggacttcttcctgtaactagctccatgagtagaatcccaaaactatacacatcgctgccctcattaagca 54530641  T
Q  334 tacctgtgcttgcgtactcaggcgaaacatatctgcagaaa 374  Q
    |||| |||||||| ||||| || ||||||||||||||||||    
T  54530642 tacccgtgcttgcatactccggtgaaacatatctgcagaaa 54530682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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