View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_1 (Length: 580)
Name: NF13897_low_1
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 37806086 - 37805953
Alignment:
| Q |
10 |
attattcttcttttaaatatatttgtgtgtgtatttaaataaatttgatttgaggttgtgctggagtaaaaattgatccatggacatgattagtgtttgt |
109 |
Q |
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| T |
37806086 |
attattcttcttttaaatatatttgtgtgtgtatttaaataaatttgatttgagattgtgctagagtaaaaattgctccatggacttgattagtgtttgt |
37805987 |
T |
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| Q |
110 |
ggtatactatttacttgtatataaaatgaggcgt |
143 |
Q |
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| T |
37805986 |
ggcatactatttacttgtatataaaatgaggcgt |
37805953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 37805688 - 37805600
Alignment:
| Q |
386 |
atgttatcaagaagaaaataaaatgtatttttcatcgacatgcaagtgatgtgatatgtctactaatatctttgcttaacgatcacaag |
474 |
Q |
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| T |
37805688 |
atgttatcaagaagaaaataaaatgtatttttcatcgacatgcaagtgatgtgatatgtctactaatttctttgcttaacaatcacaag |
37805600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 37805848 - 37805778
Alignment:
| Q |
249 |
ctcactttaacatcatatttttatcggatgaaatcttatatagattgcaccactctatctagacctcgttt |
319 |
Q |
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| T |
37805848 |
ctcactttaacattatatttttattggatgaaatcttatatagattgcaccactctatctagacctcgttt |
37805778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 519 - 557
Target Start/End: Complemental strand, 37805557 - 37805519
Alignment:
| Q |
519 |
ataatcacgagtattgaatttttgggtcaaatgggacac |
557 |
Q |
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| T |
37805557 |
ataatcacgagtattgaatttttgggtcaaatgggacac |
37805519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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