View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_10 (Length: 389)
Name: NF13897_low_10
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 26325141 - 26325529
Alignment:
| Q |
1 |
tgacatccaagtctatacagcgtaagcaaatcagtaaaactcgcttcagagatcttggagaaggtggaatctcaatcaaaggatcgactagctcgtcgct |
100 |
Q |
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| T |
26325141 |
tgacatccaagtctatacagcgtaggcaaatcagtaaaactcgcttcagagctcttggagaaggtggagtctcaatcaaaggatcgactagctcgtcgct |
26325240 |
T |
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| Q |
101 |
gcgatgacttgatgccgttgccttaaaccaatcaaccaaattcatctgaagcgcatcaaacaagtacaaaggttagactccaatatgttcatgaagtgca |
200 |
Q |
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| T |
26325241 |
gcgacgacttgataccattgccttaaaccaatcaaccaaattcatctgaagcgcatcaaacaaatacaaaggttagactccaatatgttcatgaagtgca |
26325340 |
T |
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| Q |
201 |
caaattaaacatctcaacaaaattcctgaaataacctctccaggtggtcttgaataatcaatagggcttcttcctgtgattatttccatgagtagaactc |
300 |
Q |
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| T |
26325341 |
caaattaaacatctcaacaaaattcctgaaataacctctccaggtggtcttgaataatcaatagggcttcttcctgtgattatttccatgagtagaactc |
26325440 |
T |
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| Q |
301 |
caaaactataaacatcgctacgctcattaagcatacctgtgcttgcgtactcaggcgaaacatatctgcagaaatttattgttaagaat |
389 |
Q |
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| T |
26325441 |
caaaactataaacatcgctacgctcattaagcatacctgtgcttgcgtactcaggcgaaacatatctgcataaatttattgttaagaat |
26325529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 54530325 - 54530484
Alignment:
| Q |
4 |
catccaagtctatacagcgtaagcaaatcagtaaaactcgcttcagagatcttggagaaggtggaatctcaatcaaaggatcgactagctcgtcgctgcg |
103 |
Q |
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| T |
54530325 |
catccaaatctatacagcgaaggcaaaccagtaaagctcgcttcaaagatcttggagaaggctgaatctcgatcaaaggatcaactagctcctcaccacg |
54530424 |
T |
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| Q |
104 |
atgacttgatgccgttgccttaaaccaatcaaccaaattcatctgaagcgcatcaaacaa |
163 |
Q |
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| T |
54530425 |
acgacttgctaccattcccttaaaccaatcaaccaagttcatctgaagcaaatcaaacaa |
54530484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 234 - 374
Target Start/End: Original strand, 54530542 - 54530682
Alignment:
| Q |
234 |
acctctccaggtggtcttgaataatcaatagggcttcttcctgtgattatttccatgagtagaactccaaaactataaacatcgctacgctcattaagca |
333 |
Q |
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|||||| |||||| ||| ||||||||||| || ||||||||||| | || ||||||||||||| ||||||||||| |||||||| | ||||||||||| |
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| T |
54530542 |
acctctgcaggtgctctagaataatcaatgggacttcttcctgtaactagctccatgagtagaatcccaaaactatacacatcgctgccctcattaagca |
54530641 |
T |
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| Q |
334 |
tacctgtgcttgcgtactcaggcgaaacatatctgcagaaa |
374 |
Q |
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| T |
54530642 |
tacccgtgcttgcatactccggtgaaacatatctgcagaaa |
54530682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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