View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_11 (Length: 378)
Name: NF13897_low_11
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 35699989 - 35699630
Alignment:
| Q |
1 |
agaaaaaattaaaatgttaatctctaccattcnnnnnnnaattaatatacattagccgtagatgaaaggagaatacctatataagttttttaaagggaat |
100 |
Q |
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||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35699989 |
agaaaaaattaaaatgtcaatctttaccattctttttttaattaatatacattagccgtagatgaaaggagaatacctatataatttttttaaagggaat |
35699890 |
T |
|
| Q |
101 |
ttaaaatttaaattccagaaaaataatagaacttacattaccaccagcagacctaacaatagcagacagagtttttgcaggagtttgaacattagctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35699889 |
ttaaaatttaaattccagaaaaataatagaacttacattaccaccagcagacctaacaatagcagacagagtttttgcaggagtttgaacattagctgca |
35699790 |
T |
|
| Q |
201 |
atacatatattataacccttaaacaaagaatggggacaagcttttgctcgtaaaactgcacttcttaaatccgatttgtacttcaacaaataatccttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35699789 |
atacatatattataacccttaaacaaagaatggggacaagcttttgctcgtaaaactgcacttcttaaatccgatttgtacttcaacaaataatccttat |
35699690 |
T |
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| Q |
301 |
cattcagaatgtgaggtaattcatctgcatatccatttttaagattgtgttagtggccgg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35699689 |
cattcagaatgtgaggtaattcatctgcatatccatttttaagattgtgttagtggccgg |
35699630 |
T |
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