View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_12 (Length: 367)
Name: NF13897_low_12
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 8914304 - 8913955
Alignment:
| Q |
1 |
tttgtctaatatatattagacaaactctatgtacaaaataaataatattttggataccacatataattatactttgataataaaaggttgatatcaagaa |
100 |
Q |
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| T |
8914304 |
tttgtctaatatatattagacaaactctatctacaaaataaataatattttggataccacatataattatactttgataataaaagcttgatatcaagaa |
8914205 |
T |
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| Q |
101 |
tttaaacaacaagatttaagaagaaacaattctagataaggttttccttagctctcgattaaactccatattatcaggttcttttctcttagaaccggag |
200 |
Q |
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| T |
8914204 |
tttaaacaacaagatttcggaagaaacaattctagataaggttttccttagctctcgattaaactccatattatcaggttcttttctctcataactggag |
8914105 |
T |
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| Q |
201 |
gattaacaagaaacaagaatgtaaacaattcgtccttgtgcatgtatgtactagattctaaagaagactgtcatgaattaatcgatcatttcattcaata |
300 |
Q |
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| T |
8914104 |
gattaacaagaaacaagaatgtaaacaattcgtccttgtgcatgtatgtactagattctaaagaagactgtcatgaattaatcgatcatttcattcaata |
8914005 |
T |
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| Q |
301 |
taacgacagaaactgaactgattttatcaacaattggttccatacaaaga |
350 |
Q |
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| T |
8914004 |
taacgacagaaactgaactgattttatcaacaattggttccatacaaaga |
8913955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8914281 - 8914325
Alignment:
| Q |
1 |
tttgtctaatatatattagacaaactctatgtacaaaataaataa |
45 |
Q |
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| T |
8914281 |
tttgtctaatatatattagacaaactctatgtacaaaataaataa |
8914325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 8346999 - 8346948
Alignment:
| Q |
300 |
ataacgacagaaactgaac-tgattttatcaacaattggttccatacaaaga |
350 |
Q |
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|||| |||||||||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
8346999 |
ataatgacagaaactgaacatgattatatcaacaattggttctatacaaaga |
8346948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 42822622 - 42822673
Alignment:
| Q |
300 |
ataacgacagaaactgaac-tgattttatcaacaattggttccatacaaaga |
350 |
Q |
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|||| |||||||||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
42822622 |
ataatgacagaaactgaacatgattatatcaacaattggttctatacaaaga |
42822673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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