View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13897_low_13 (Length: 346)

Name: NF13897_low_13
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13897_low_13
NF13897_low_13
[»] chr8 (4 HSPs)
chr8 (177-331)||(12681247-12681401)
chr8 (13-118)||(12681083-12681188)
chr8 (256-292)||(14279555-14279591)
chr8 (33-61)||(33508666-33508694)
[»] chr6 (2 HSPs)
chr6 (33-116)||(10067705-10067788)
chr6 (33-116)||(10219576-10219659)
[»] chr1 (4 HSPs)
chr1 (33-86)||(10519502-10519555)
chr1 (256-292)||(16791367-16791403)
chr1 (23-76)||(34177459-34177512)
chr1 (42-86)||(29795253-29795297)
[»] chr7 (1 HSPs)
chr7 (44-94)||(46719829-46719879)
[»] chr3 (1 HSPs)
chr3 (44-97)||(22235478-22235531)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 177 - 331
Target Start/End: Original strand, 12681247 - 12681401
Alignment:
Q  177 gctttgcatatcaaatcatcttaattaattgttcgacgtacaatatatccaattcggactaagacaaaaatcaaatcactttttggtggtggttagggtt 276  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||  |||||||  |||||    
T  12681247 gctttgcatatcaaatcatcttaattaattgttcgacgtagaagatatccaattcgaactaagacaaaaatcaaatcactttttaatggtggtcggggtt 12681346  T
Q  277 cgaaccccgaaccttgacaaaaatcaaatcgctaataactctaaatgtattccat 331  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  12681347 cgaaccccaaaccttgacaaaaatcaaatcgcaaataactctaaatgtattccat 12681401  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 12681083 - 12681188
Alignment:
Q  13 aatattagatttaaccgatcattttaatgtcagagattattttgattaacatattgcacaatcagataatatttggaaatttcgacgaattgagagacta 112  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12681083 aatattagatttagccgatcattttaatgtcagagattattttgactaacatattgcacagtcagataatatttggaaatttcgacgaattgagagacta 12681182  T
Q  113 ttgtaa 118  Q
    ||||||    
T  12681183 ttgtaa 12681188  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 14279555 - 14279591
Alignment:
Q  256 tttttggtggtggttagggttcgaaccccgaaccttg 292  Q
    |||||||||||||| || |||||||||||||||||||    
T  14279555 tttttggtggtggtcagagttcgaaccccgaaccttg 14279591  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 33508666 - 33508694
Alignment:
Q  33 attttaatgtcagagattattttgattaa 61  Q
    |||||||||||||||||||||||||||||    
T  33508666 attttaatgtcagagattattttgattaa 33508694  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 10067705 - 10067788
Alignment:
Q  33 attttaatgtcagagattattttgattaacatattgcacaatcagataatatttggaaatttcgacgaattgagagactattgt 116  Q
    |||||||||||||||| |||||||||||||| | | |||||||||| | |||||  |||||||||   ||||||||||||||||    
T  10067705 attttaatgtcagagactattttgattaacaaaatacacaatcagagactattttaaaatttcgatacattgagagactattgt 10067788  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 10219659 - 10219576
Alignment:
Q  33 attttaatgtcagagattattttgattaacatattgcacaatcagataatatttggaaatttcgacgaattgagagactattgt 116  Q
    ||||||| |||||||| |||||||| ||||| | |||||||||||  | ||||| |||||||||||  ||| || |||||||||    
T  10219659 attttaacgtcagagactattttgactaacaaagtgcacaatcaggaactattttgaaatttcgacacattaagggactattgt 10219576  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 10519502 - 10519555
Alignment:
Q  33 attttaatgtcagagattattttgattaacatattgcacaatcagataatattt 86  Q
    |||||||||||||| |||||||||||||| | |||| ||||||||||| |||||    
T  10519502 attttaatgtcagaaattattttgattaataaattgtacaatcagatactattt 10519555  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 16791367 - 16791403
Alignment:
Q  256 tttttggtggtggttagggttcgaaccccgaaccttg 292  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16791367 tttttggtggtggttcgggttcgaaccccgaaccttg 16791403  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 34177459 - 34177512
Alignment:
Q  23 ttaaccgatcattttaatgtcagagattattttgattaacatattgcacaatca 76  Q
    |||||| | ||||||||||| ||||| |||||||| ||||||| ||||||||||    
T  34177459 ttaaccaaacattttaatgtaagagactattttgactaacataatgcacaatca 34177512  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 29795253 - 29795297
Alignment:
Q  42 tcagagattattttgattaacatattgcacaatcagataatattt 86  Q
    ||||||| |||||||||||||||| |||||||||| ||| |||||    
T  29795253 tcagagactattttgattaacatagtgcacaatcaaatactattt 29795297  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 46719879 - 46719829
Alignment:
Q  44 agagattattttgattaacatattgcacaatcagataatatttggaaattt 94  Q
    ||||| |||||||||||||||| |||||||||||| | ||||| |||||||    
T  46719879 agagactattttgattaacataatgcacaatcagaaactattttgaaattt 46719829  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 22235478 - 22235531
Alignment:
Q  44 agagattattttgattaacatattgcacaatcagataatatttggaaatttcga 97  Q
    |||||||||||||| ||||| |||||||||||| | | ||||| ||||||||||    
T  22235478 agagattattttgactaacaaattgcacaatcaaaaattattttgaaatttcga 22235531  T

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