View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_16 (Length: 306)
Name: NF13897_low_16
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 45566495 - 45566768
Alignment:
| Q |
17 |
cttcactacttaacttctaaccaactcttacaatgccatcaatctaacaccattactgtagtaaaaaagaatcaaacatgattacataattaannnnnnn |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45566495 |
cttcactacttaacttctacacaactcttacaatgccatcaatcaaacacaattactgtagtaaaaaagaatcaaacatgattacataattaattttttt |
45566594 |
T |
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| Q |
117 |
natcaactagcatattgaccgaaaattcactctaataaaaggggaatctgaggttgagatgctagcgcctatcacgggactaaaattcaattatctataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45566595 |
tatcaactagcatattgaccgaaaattcactctaataaatggggaatctgaggttgagatgctagcgcctatcacgggactaaaattcaattatctataa |
45566694 |
T |
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| Q |
217 |
gattttaaacaaaagacatacaaatgatacaattgatgcccaaaataggaccacaacattcccccagtaggaag |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45566695 |
cattttaaacaaaagacatacaaatgatacaattgatgcccaaaataggaccacaacattcccccagtaggaag |
45566768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 35817961 - 35817808
Alignment:
| Q |
126 |
gcatattgaccgaaaattcactctaataaaaggggaatctgaggttgagatgctagcgcctatcacgggactaaaattcaattatctataagattttaaa |
225 |
Q |
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||||||||||||||||| ||| |||||||| |||||| |||||||||| |||||||||||||||||| || ||||||||||| |||||| |||||||||| |
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| T |
35817961 |
gcatattgaccgaaaatgcaccctaataaatggggaacctgaggttgaaatgctagcgcctatcacgagattaaaattcaatcatctattagattttaaa |
35817862 |
T |
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| Q |
226 |
caaaagacatacaaatgatacaattgatgcccaaaataggaccacaacattccc |
279 |
Q |
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|| || || ||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
35817861 |
cagaacacgtacaaatgatacaattgatacccaaaataggacctcaacattccc |
35817808 |
T |
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