View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_17 (Length: 281)
Name: NF13897_low_17
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 4932814 - 4933067
Alignment:
| Q |
10 |
aacaatatgagcaattcttcaggagatgttaacaagactaacccttcaaacatagggtacccttccttaccaaaaaaggattcttcccattcttacattc |
109 |
Q |
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| T |
4932814 |
aacactatgagcaattcttcaggagatgttaacaagactaacccttcaaacatagggtacccttccttaccaaaaaaggattcttcccattcttacattc |
4932913 |
T |
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| Q |
110 |
tttgttttggaaatgagaatccagaatcaatgttgaacattggttcaactttaaaaccaaaaggcaaggtttctaatcatgggaaatctttaacctcaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4932914 |
tttgttttggaaatgagaatccagaatcaatgttgaacattggttcaactttaaaaccaaaaggcaaggtttctaatcatgggaaatctttagcctcaaa |
4933013 |
T |
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| Q |
210 |
agggtccttagaaaaccaaaaaaggggaccaaaacgcaatattcaagagagcaa |
263 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4933014 |
agggtccttagaaaaccaaaaaaagggaccaaaacgcaatattcaagagagcaa |
4933067 |
T |
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