View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13897_low_19 (Length: 246)

Name: NF13897_low_19
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13897_low_19
NF13897_low_19
[»] chr4 (8 HSPs)
chr4 (13-228)||(36296539-36296754)
chr4 (13-228)||(35097701-35097916)
chr4 (13-228)||(35106879-35107094)
chr4 (13-228)||(35072766-35072981)
chr4 (59-228)||(35098036-35098205)
chr4 (17-228)||(36940561-36940772)
chr4 (65-223)||(36961300-36961458)
chr4 (36-112)||(36935979-36936055)
[»] chr6 (2 HSPs)
chr6 (13-228)||(24014265-24014480)
chr6 (13-228)||(24040822-24041037)
[»] chr1 (1 HSPs)
chr1 (14-146)||(3123093-3123225)
[»] chr5 (2 HSPs)
chr5 (15-136)||(26578978-26579099)
chr5 (36-84)||(34919000-34919048)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 36296754 - 36296539
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36296754 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcagattagtggagagag 36296655  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36296654 gaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 36296555  T
Q  213 gatcaggtgaaagctg 228  Q
    ||||||||||||||||    
T  36296554 gatcaggtgaaagctg 36296539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 35097701 - 35097916
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||| || ||||||||    
T  35097701 cagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagag 35097800  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||||||| || ||||| || |||    
T  35097801 gaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatg 35097900  T
Q  213 gatcaggtgaaagctg 228  Q
    || || ||||||||||    
T  35097901 gaccaagtgaaagctg 35097916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 35106879 - 35107094
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    ||||||| || ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || || |||||    
T  35106879 cagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagag 35106978  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    |||| |||| |||||||| |||||  ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||    
T  35106979 gaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatg 35107078  T
Q  213 gatcaggtgaaagctg 228  Q
    ||||| ||||||||||    
T  35107079 gatcaagtgaaagctg 35107094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 35072981 - 35072766
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    ||||||| || ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || || |||||    
T  35072981 cagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagag 35072882  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    |||| |||| |||||||| |||||  ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||  || || ||||| || |||    
T  35072881 gaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatg 35072782  T
Q  213 gatcaggtgaaagctg 228  Q
    ||||| ||||||||||    
T  35072781 gatcaagtgaaagctg 35072766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 35098036 - 35098205
Alignment:
Q  59 agaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggag 158  Q
    ||||||||||||||||||||||| ||| || ||||||| ||| || ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||    
T  35098036 agaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggag 35098135  T
Q  159 cgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctg 228  Q
    ||||||||||| || || |||||||||||||||||||| || ||||| || ||||| || ||||||||||    
T  35098136 cgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctg 35098205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 36940772 - 36940561
Alignment:
Q  17 agcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaac 116  Q
    |||||||||||| || |||||| |||| ||| |||||||||| |||| ||| || || ||||||||||| || ||||||| ||| |||||| | || | |    
T  36940772 agcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgatagggttcttcagataagtggaaaaagaagc 36940673  T
Q  117 gttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatc 216  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||| |||||||| || |||||||| || ||||| || |||||||    
T  36940672 gttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatc 36940573  T
Q  217 aggtgaaagctg 228  Q
    |  |||||||||    
T  36940572 aaatgaaagctg 36940561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 36961300 - 36961458
Alignment:
Q  65 gaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagc 164  Q
    |||||| || ||||||| ||| || ||||||| ||| || |||||||| | ||||||||||||||| ||||||||| |||||||| ||||||||| ||||    
T  36961300 gaaggtagagattgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagc 36961399  T
Q  165 agtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaa 223  Q
    ||||| || || ||||||| ||| |||||| | || ||||| |||||||||||||||||    
T  36961400 agtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaggtgaa 36961458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 36936055 - 36935979
Alignment:
Q  36 gatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||| ||| |||||||||| |||||||| || || ||||||||||| |  ||||||| ||| || ||||||||    
T  36936055 gatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatatggttcttcagataagcggagagag 36935979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 24014480 - 24014265
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| ||| || ||||||||    
T  24014480 cagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagag 24014381  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |||||||||||||| || |||    
T  24014380 gaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatg 24014281  T
Q  213 gatcaggtgaaagctg 228  Q
    ||||| ||||||||||    
T  24014280 gatcaagtgaaagctg 24014265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 24041037 - 24040822
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || || |||||    
T  24041037 cagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagag 24040938  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||||||||| |||||||| |||||  ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||    
T  24040937 gaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatg 24040838  T
Q  213 gatcaggtgaaagctg 228  Q
    ||||| ||||||||||    
T  24040837 gatcaagtgaaagctg 24040822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 3123093 - 3123225
Alignment:
Q  14 agaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagagg 113  Q
    ||||||||| ||||| |||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||| |  ||||||| ||| || ||||| |||    
T  3123093 agaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttcagataagcggagaaagg 3123192  T
Q  114 aacgttgagaaagaagacaagaacaatcaatgg 146  Q
    | |||||||||||||||||||||| ||| ||||    
T  3123193 accgttgagaaagaagacaagaacgatcgatgg 3123225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 26578978 - 26579099
Alignment:
Q  15 gaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagagga 114  Q
    ||||||||| | || ||||| |||||||| ||  |||||||||| |||||||||||||| |||||||| ||  | ||| |   ||| |||||||||||||    
T  26578978 gaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagagga 26579077  T
Q  115 acgttgagaaagaagacaagaa 136  Q
    |  ||||||| |||||||||||    
T  26579078 aaattgagaaggaagacaagaa 26579099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 34919000 - 34919048
Alignment:
Q  36 gatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatg 84  Q
    |||||||||||  ||||||| ||||||||||| |||||||| |||||||    
T  34919000 gatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatg 34919048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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