View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_22 (Length: 213)
Name: NF13897_low_22
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 45655363 - 45655150
Alignment:
| Q |
1 |
tactttaatca-tatcttaagaacacttattaacattctctttatttaaaataagaacaatttttataaaaagaaaatagattataaaaattaccattgt |
99 |
Q |
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| T |
45655363 |
tactttaatcaatatcttaagaatacttgttaatattctctttatttaaaataagaacaatttttataaaaagaaaatagattataaaaattaccattgt |
45655264 |
T |
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| Q |
100 |
aaatttaggatttaaatatcattgtagtcattcatatactattctccatcctatacttacgactactttgataaatagtaggttaacacnnnnnnngaga |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45655263 |
aaatttaggacttaaatatcattgtagtcattcatatactattctccatcctatacttacgactactttgataaatagtaggttaacactttttttgaga |
45655164 |
T |
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| Q |
200 |
gaagttccctttat |
213 |
Q |
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|||||||||||||| |
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| T |
45655163 |
gaagttccctttat |
45655150 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 1758458 - 1758421
Alignment:
| Q |
14 |
tcttaagaacacttattaacattctctttatttaaaat |
51 |
Q |
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| T |
1758458 |
tcttaagaacacttattaacattttctatatttaaaat |
1758421 |
T |
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