View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13897_low_3 (Length: 571)

Name: NF13897_low_3
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13897_low_3
NF13897_low_3
[»] chr3 (3 HSPs)
chr3 (143-549)||(27818860-27819268)
chr3 (38-108)||(27818755-27818825)
chr3 (39-87)||(31339734-31339782)
[»] chr4 (1 HSPs)
chr4 (38-85)||(22487775-22487822)
[»] chr6 (2 HSPs)
chr6 (53-91)||(12588071-12588109)
chr6 (261-310)||(26001341-26001390)
[»] chr8 (1 HSPs)
chr8 (39-88)||(14539318-14539367)
[»] chr7 (2 HSPs)
chr7 (38-87)||(40954051-40954100)
chr7 (198-234)||(11750065-11750101)
[»] chr1 (1 HSPs)
chr1 (40-88)||(21487231-21487279)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 143 - 549
Target Start/End: Original strand, 27818860 - 27819268
Alignment:
Q  143 tagatagattttttaagaatttagctagagagaaaataggggtcaacaggtggaggtaattttgcaataaaaatatcattttatatagttgtttttagtt 242  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27818860 tagatagattttttaagagtttagctagagagaaaataggggtcaacaggtggaggtaattttgcaataaaaatatcattttatatagttgtttttagtt 27818959  T
Q  243 aagctaaaaattgttttcttaaaataagtgatatttattatgataaacgaacataaaataaattctaannnnnnnnnnaaatctataaaaaataatctta 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| |||    
T  27818960 aagctaaaaattgttttcttaaaataagtgatatttattatgataaacgaacataaaataaattctaa---tttttttaaatctataaaaaataatttta 27819056  T
Q  343 aagagactatttgcaaggattaaaacataactaattttaacgttcaataatttagagatttcataaaatatatgtatccattttctatttcttcataata 442  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27819057 aagagactatttgcaaggattaaaacataactaattttgacgttcaataatttagagatttcataaaatatatgtatccattttctatttcttcataata 27819156  T
Q  443 aaaatc-nnnnnnnncttcaaagattcaaattcattacaaacacatacatttaccaattcaaattat----gagagagagaaggctggttttggctaaag 537  Q
    ||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  27819157 aaaatctttttttttcttcaaagattcaaattcattacaaacacatacatttaccaattcaaattatgagagagagagagaaggctggttttggctaaag 27819256  T
Q  538 ttaattggcact 549  Q
    ||||||||||||    
T  27819257 ttaattggcact 27819268  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 27818755 - 27818825
Alignment:
Q  38 tattttgtgtaggcacaagcccacacatcaagacacatgcatccgtccctgcatgtggtgtaacgactttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27818755 tattttgtgtaggcacaagcccacacatcaagacacatgcatccgtccctgcatgtggtgtaacgactttt 27818825  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 31339782 - 31339734
Alignment:
Q  39 attttgtgtaggcacaagcccacacatcaagacacatgcatccgtccct 87  Q
    ||||||||||||||||||||||||||| ||   |||| |||||||||||    
T  31339782 attttgtgtaggcacaagcccacacatgaaccaacatacatccgtccct 31339734  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 22487775 - 22487822
Alignment:
Q  38 tattttgtgtaggcacaagcccacacatcaagacacatgcatccgtcc 85  Q
    |||||||||| |||||||||||||||  ||| ||||||||||||||||    
T  22487775 tattttgtgtgggcacaagcccacaccacaacacacatgcatccgtcc 22487822  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 12588071 - 12588109
Alignment:
Q  53 caagcccacacatcaagacacatgcatccgtccctgcat 91  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  12588071 caagcccacacatcaacacacatgcattcgtccctgcat 12588109  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 26001341 - 26001390
Alignment:
Q  261 ttaaaataagtgatatttattatgataaacgaacataaaataaattctaa 310  Q
    |||||||||||||| ||||||| ||||||| |||  ||||||||||||||    
T  26001341 ttaaaataagtgatttttattacgataaacaaacgcaaaataaattctaa 26001390  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 14539367 - 14539318
Alignment:
Q  39 attttgtgtaggcacaagcccacacatcaagacacatgcatccgtccctg 88  Q
    ||||||||||||||||||||||||||| |||  ||||||||  |||||||    
T  14539367 attttgtgtaggcacaagcccacacataaagcaacatgcatttgtccctg 14539318  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 40954100 - 40954051
Alignment:
Q  38 tattttgtgtaggcacaagcccacacatcaagacacatgcatccgtccct 87  Q
    |||||||||||||||||| ||||| |  ||| ||||||||||||||||||    
T  40954100 tattttgtgtaggcacaatcccaccccacaacacacatgcatccgtccct 40954051  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 11750101 - 11750065
Alignment:
Q  198 gtaattttgcaataaaaatatcattttatatagttgt 234  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  11750101 gtaattttgtaataaaaaaatcattttatatagttgt 11750065  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 21487279 - 21487231
Alignment:
Q  40 ttttgtgtaggcacaagcccacacatcaagacacatgcatccgtccctg 88  Q
    ||||||||||||||| |||||||||||||  |||||  |||||||||||    
T  21487279 ttttgtgtaggcacatgcccacacatcaaaccacatagatccgtccctg 21487231  T

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