View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_4 (Length: 557)
Name: NF13897_low_4
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 151 - 539
Target Start/End: Original strand, 17859508 - 17859896
Alignment:
| Q |
151 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859508 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
17859607 |
T |
|
| Q |
251 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859608 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
17859707 |
T |
|
| Q |
351 |
agttaaaataaacatattaaatacctgatacaacagtggcagacaactcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17859708 |
agttaaaataaacatattaaatacctgatacaacagtggcagacagctcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
17859807 |
T |
|
| Q |
451 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaagg |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859808 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaagg |
17859896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17859358 - 17859411
Alignment:
| Q |
1 |
agcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17859358 |
agcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
17859411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 537
Target Start/End: Complemental strand, 22348149 - 22348055
Alignment:
| Q |
443 |
ggtttcaaccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaa |
537 |
Q |
| |
|
||||||| ||||||||| | ||| ||||| || || ||||||| || ||||||| ||||||||||| ||||||| ||||| ||||||||||| |
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| T |
22348149 |
ggtttcagccaattttgagtacaaatcaaagcttccgccatttccggactcaatgagcttctatatgtgtctaaaatccttcccccagtgctaaa |
22348055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 151 - 539
Target Start/End: Complemental strand, 34916304 - 34915916
Alignment:
| Q |
151 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
250 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916304 |
cactaacattagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
34916205 |
T |
|
| Q |
251 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916204 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
34916105 |
T |
|
| Q |
351 |
agttaaaataaacatattaaatacctgatacaacagtggcagacaactcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916104 |
agttaaaataaacatattaaatacctgatacaacagtggtagacagctcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
34916005 |
T |
|
| Q |
451 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaagg |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916004 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaagg |
34915916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34916454 - 34916401
Alignment:
| Q |
1 |
agcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34916454 |
agcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
34916401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 151 - 539
Target Start/End: Original strand, 4968039 - 4968427
Alignment:
| Q |
151 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4968039 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaaaaccacaagatgttgatc |
4968138 |
T |
|
| Q |
251 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4968139 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaaacaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
4968238 |
T |
|
| Q |
351 |
agttaaaataaacatattaaatacctgatacaacagtggcagacaactcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4968239 |
agttaaaataaacatattaaatacctgatacaacagtggcagacagctcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
4968338 |
T |
|
| Q |
451 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaagg |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4968339 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaagg |
4968427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4967889 - 4967942
Alignment:
| Q |
1 |
agcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4967889 |
agcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
4967942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 537
Target Start/End: Original strand, 14593114 - 14593159
Alignment:
| Q |
492 |
tcaatgaacttctatatgtatctaaaactcttcctccagtgctaaa |
537 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
14593114 |
tcaaggaactcctatatgtgtctaaaactcttcctccagtgctaaa |
14593159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 537
Target Start/End: Complemental strand, 13308444 - 13308410
Alignment:
| Q |
503 |
ctatatgtatctaaaactcttcctccagtgctaaa |
537 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
13308444 |
ctatatgtgtctaaaactcttcctccagtgctaaa |
13308410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 485
Target Start/End: Original strand, 16298749 - 16298791
Alignment:
| Q |
443 |
ggtttcaaccaattttgtgcacagatcaatgcctctgccattt |
485 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
16298749 |
ggtttcaaccaattttgggtacagattaatgcctctgccattt |
16298791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 485
Target Start/End: Original strand, 22896245 - 22896287
Alignment:
| Q |
443 |
ggtttcaaccaattttgtgcacagatcaatgcctctgccattt |
485 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
22896245 |
ggtttcaaccaattttgggtacagattaatgcctctgccattt |
22896287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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