View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_5 (Length: 426)
Name: NF13897_low_5
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 46627972 - 46628377
Alignment:
| Q |
1 |
tgcaacatgaggtatacaaacctaatatgtaattgaatgcatgtattaaaaaattcccctcatcatacatgtaaattaaattcatccataannnnnnnaa |
100 |
Q |
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| T |
46627972 |
tgcaacatgaggtatacaaacctaatatgtaattgaatgcatgtattaaaaaatacccctcatcatacatgtaaattaaattaatccataatttttttaa |
46628071 |
T |
|
| Q |
101 |
tttctggagtgtatttctactgtcaaaaatgatcttatatacttgtttttcctacagtgcttcagaacttaccaagcatgcactagcagctatatcatgt |
200 |
Q |
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| T |
46628072 |
tttccggagtgtatttctactgtcaaaaatgatcttatatacttgtttttcctacagtgcttcagaacttaccaagcatgcactagcagctatatcatgt |
46628171 |
T |
|
| Q |
201 |
tctctgattagctggaatcaaaggatttatatatctccaatcaaacagtatctcatattgtaaacccatgtgaacaacattattagccatacacaagatt |
300 |
Q |
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| T |
46628172 |
tctctgattagctggaatcaaaggatttat----ctccaatcaaacagtatctcatattgtaaacccatgtgaacaacattattagccatacacaagatt |
46628267 |
T |
|
| Q |
301 |
ctccaaagttgttgattcaaagcctgtgccttgtattatcccttgttttagtattctaaacaaggtaataaacaatttaaactccattattttgttttaa |
400 |
Q |
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| T |
46628268 |
ctccaaagttgttgattcaaagcctgtgccttgtattgtcccttgttttagtattctaaacaaggtaataaacaatttaaactccattattttgttttaa |
46628367 |
T |
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| Q |
401 |
gtcaagtatt |
410 |
Q |
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|||||||||| |
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| T |
46628368 |
gtcaagtatt |
46628377 |
T |
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