View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_7 (Length: 412)
Name: NF13897_low_7
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 38096150 - 38096557
Alignment:
| Q |
5 |
gagagaaatgaagatcaatatgaagaatatgaagaggaattattaggagatggagagaaaacaagttacacaagttcaacaacaacacctcattctcgtt |
104 |
Q |
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| T |
38096150 |
gagagtaatgaagatcaatatgaagaatatgaagaggaattattaggagatggagagaaaacaagttacacaagttcaacaacaacacctcattctcgtt |
38096249 |
T |
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| Q |
105 |
gctcaagaggtgtttcaacagaagaacttgatgagatagttataactannnnnnnnnnnnnnnnnnnnnntcctacaacaaattccactactacccttgc |
204 |
Q |
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| T |
38096250 |
gctcaagaggtgtttcaacagaagaactcgacgagatagttataactaacccaccacaaccaccaccaccttctacaacaaattccactactacccttgc |
38096349 |
T |
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| Q |
205 |
tgagaaactgaaacaaagagaagaaagaagggtcaacaatgtcaaagatagtaactatccaacgacgtcggcaccatcgactacgtcgagtcgttactct |
304 |
Q |
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| T |
38096350 |
tgagaaactgaaacaaagagaagaaagaagggtcaacaatgtcaaagataataactatccaacgacgtcggcaccatcgactacgtcgagtcgttactct |
38096449 |
T |
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| Q |
305 |
gttttgctgcagctgatagcgtgtggaagttcaggtgcagagatgaaagcaaagcagcagtaagggaggctgagcaatgtggggcccacaagcaaaagaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |||| |
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| T |
38096450 |
gttttgctgcagctgatagcgtgtggaagttcaggtgcagagatgaaagcaaagcagcaggaagggaggctgagcaatgtggggacaacaagcaagagaa |
38096549 |
T |
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| Q |
405 |
gggagagt |
412 |
Q |
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| T |
38096550 |
gggagagt |
38096557 |
T |
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