View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13897_low_8 (Length: 399)
Name: NF13897_low_8
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 43764384 - 43764765
Alignment:
| Q |
1 |
ttttttactcctccaatgaaatggaaaaaggaaatggtgattcgtaaaagaggtgcatgcgtaaggatttacggaattccgttgcatgcatggaatgtag |
100 |
Q |
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| T |
43764384 |
ttttttactcctccaatgaaatggaaaaaggaaatggtgatacgtaaaagaggtgcatgggtaaggatttatggaattccgttgcatgcatggaatgtag |
43764483 |
T |
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| Q |
101 |
annnnnnnaagttgtgtgtctttgactgtggccgccttttgaaagtggatgaccttgtcgtggataaagttcgttttgattacgcgcgtgttctaatatc |
200 |
Q |
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| T |
43764484 |
atttttttaagttgtgtgtctatgactgtggccgccttttcaaagtggatgactttaccgtggataaagttcgttttgattacgcccgtgttctaatatc |
43764583 |
T |
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| Q |
201 |
aacgccgtcactagaaattatcaattttgaagctaaggtgttggtggatggtgaacttcttggttttacaattgtcgaggagtggggctttgctttaggg |
300 |
Q |
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| T |
43764584 |
aacgccgtcactagaaattatcaattctgaagctaaggtgttggtggatggtgaacttcttgattttacaattgtcgagaagtggggctttgctttaggg |
43764683 |
T |
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| Q |
301 |
gaggatgcttgtttgggggactatgctgagtctgacattgaaaacgacaatcagctagatgggattaatgaggaggtggctg |
382 |
Q |
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| T |
43764684 |
gaggatgcttgtttgggggactatgctgagtctgacattgaaaacaacgatcatctagatgggattaatgaggaggtggctg |
43764765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 13153292 - 13153371
Alignment:
| Q |
235 |
aaggtgttggtggatggtgaacttcttggttttacaattgtcgaggagtggggctttgctttaggggaggatgcttgtttgg |
316 |
Q |
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| T |
13153292 |
aaggttttggtggatggagaacttcttgactttaaaattgttgaggagggggggtt--ctttaggggaggatgcttgtttgg |
13153371 |
T |
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