View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13897_low_9 (Length: 398)
Name: NF13897_low_9
Description: NF13897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13897_low_9 |
 | |
|
| [»] scaffold0284 (1 HSPs) |
| | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 3690188 - 3689851
Alignment:
| Q |
18 |
agaccaacttgcagacttgctaactaaacctttagccacaaccaagttcatagagcttacatccaagataaaggtaattaatggtacctttatcttgagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3690188 |
agaccaacttgcagacttgctaactaaacctttagccacaaccaagttcacagagcttacatccaagataaaggtaattaatggtacctttatcttgagg |
3690089 |
T |
|
| Q |
118 |
gggcgtaatggaccgaagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgat |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3690088 |
gggcgtaatggaccgaagcaaattaacaaagaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgat |
3689989 |
T |
|
| Q |
218 |
ggtgttgcacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgtaa |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
3689988 |
ggtgttgcacgttacagctgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatgtatatgatcaattgtaa |
3689889 |
T |
|
| Q |
318 |
ggtaagacaaaaatatattcaataatatatactttata |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3689888 |
ggtaagacaaaaatatattcaataatatatactttata |
3689851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 122 - 356
Target Start/End: Complemental strand, 3704787 - 3704553
Alignment:
| Q |
122 |
gtaatggaccgaagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
221 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704787 |
gtaatggaccgaagcaaattaacaaagaagcatgcaatatcattccaaatcaatgagaattgatttggtcaattgtgcattaataatcataatgatggtg |
3704688 |
T |
|
| Q |
222 |
ttgcacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgtaaggta |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3704687 |
ttgcacgttacagctgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatgtatatgatcaattgtaaggta |
3704588 |
T |
|
| Q |
322 |
agacaaaaatatattcaataatatatactttatat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704587 |
agacaaaaatatattcaataatatatactttatat |
3704553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 123 - 355
Target Start/End: Complemental strand, 14195280 - 14195048
Alignment:
| Q |
123 |
taatggaccgaagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtgt |
222 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14195280 |
taatggaccgaagcaaattaacaaagaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtgt |
14195181 |
T |
|
| Q |
223 |
tgcacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgtaaggtaa |
322 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14195180 |
tgtacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatttatatgatcaattgtaaggtaa |
14195081 |
T |
|
| Q |
323 |
gacaaaaatatattcaataatatatactttata |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14195080 |
gacaaaaatatattcaataatatatactttata |
14195048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 26463485 - 26463529
Alignment:
| Q |
354 |
tatcttcaacctccctcttttcaccaccaccaaactcaataacac |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26463485 |
tatcttcaacctccctcttttcaccaccaccaaactcaataacac |
26463529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 32074399 - 32074737
Alignment:
| Q |
18 |
agaccaacttgcagacttgctaactaaacctttagccacaaccaagttcatagagcttacatccaagataaaggtaattaatggtacctttatcttgagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32074399 |
agaccaacttgcagacttgctaactaaacctttagccacaaccaagttcacagagcttacatccaagataaaggtaattaatggtacctttatcttgagg |
32074498 |
T |
|
| Q |
118 |
gggcgtaatggaccg-aagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatga |
216 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32074499 |
gggcgtaatggactgcaagctaattaacaaagaagcatgcaatatcaatccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatga |
32074598 |
T |
|
| Q |
217 |
tggtgttgcacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgta |
316 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32074599 |
tggtgttgtacgttacagctgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatgtatatgatcaattgta |
32074698 |
T |
|
| Q |
317 |
aggtaagacaaaaatatattcaataatatatactttata |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32074699 |
aggtaagacaaaaatatattcaataatatatactttata |
32074737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 123 - 356
Target Start/End: Original strand, 32068448 - 32068682
Alignment:
| Q |
123 |
taatggaccg-aagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
221 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32068448 |
taatggaccgcaagctaattaacaaagaagcatgcaatatcaatccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
32068547 |
T |
|
| Q |
222 |
ttgcacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgtaaggta |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32068548 |
ttgtacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatgtatatgatcaattgtaaggta |
32068647 |
T |
|
| Q |
322 |
agacaaaaatatattcaataatatatactttatat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32068648 |
agacaaaaatatattcaataatatatactttatat |
32068682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 28083181 - 28082843
Alignment:
| Q |
18 |
agaccaacttgcagacttgctaactaaacctttagccacaaccaagttcatagagcttacatccaagataaaggtaattaatggtacctttatcttgagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28083181 |
agaccaacttgcagacttgctaactaaacctttagccacaaccaagttcacagagcttacatccaagataaaggtaatcaatggtacctttatcttgagg |
28083082 |
T |
|
| Q |
118 |
gggcgtaatggaccg-aagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatga |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28083081 |
gggcgtaatggaccgcaagctaattaacaaagaagcatgcaatatcaatccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatga |
28082982 |
T |
|
| Q |
217 |
tggtgttgcacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgta |
316 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
28082981 |
tggtgttgaacgttacagctgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatatatatgatcaattgta |
28082882 |
T |
|
| Q |
317 |
aggtaagacaaaaatatattcaataatatatactttata |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28082881 |
aggtaagacaaaaatatattcaataatatatactttata |
28082843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 123 - 355
Target Start/End: Complemental strand, 27996540 - 27996307
Alignment:
| Q |
123 |
taatggaccg-aagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
221 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27996540 |
taatggaccgcaagctaattaacaaagaagcatgcaatatcaatccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
27996441 |
T |
|
| Q |
222 |
ttgcacgttacagttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgtaaggta |
321 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27996440 |
ttgtacgttacagctgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatctatatgatcaattgtaaggta |
27996341 |
T |
|
| Q |
322 |
agacaaaaatatattcaataatatatactttata |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27996340 |
agacaaaaatatattcaataatatatactttata |
27996307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 123 - 356
Target Start/End: Complemental strand, 20099755 - 20099501
Alignment:
| Q |
123 |
taatggaccg-aagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
221 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20099755 |
taatggaccgcaagctaattaacaaggaaacatgcaatatcaatccaaatcaatgagatttgatttggtcaattgtgcattaataaccataatgatggtg |
20099656 |
T |
|
| Q |
222 |
ttgcacgttaca--------------------gttgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgc |
301 |
Q |
| |
|
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20099655 |
ttgtacgttacatatgcttatggcatgttacagctgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatat |
20099556 |
T |
|
| Q |
302 |
atatgatcaattgtaaggtaagacaaaaatatattcaataatatatactttatat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20099555 |
atatgatcaattgtaaggtaagacaaaaatatattcaataatatatactttatat |
20099501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 28097912 - 28097810
Alignment:
| Q |
123 |
taatggaccg-aagctaattaacaaaaaagcatgcaatatcattccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
221 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28097912 |
taatggaccgcaagctaattaacaaagaagcatgcaatatcaatccaaatcaatgagatttgatttggtcaattgtgcattaataatcataatgatggtg |
28097813 |
T |
|
| Q |
222 |
ttg |
224 |
Q |
| |
|
||| |
|
|
| T |
28097812 |
ttg |
28097810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 1108759 - 1108711
Alignment:
| Q |
81 |
caagataaaggtaattaatggtacctttatcttgagggggcgtaatgga |
129 |
Q |
| |
|
|||||| ||||| ||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
1108759 |
caagatgaaggtcattgatggtaccttcatcttgagggggcgtattgga |
1108711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 6070 - 5951
Alignment:
| Q |
236 |
tgcaataggcatatgtcaagcaagcaattcaattgtatttatcactctcgtaatatatatacatgcatatgatcaattgtaaggtaagacaaaaatatat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6070 |
tgcaataggcatatgtcaagcaagcaattcaattgtatttatcactcttgtaatatatatacatgtatatgatcaattgtaaggtaagacaaaaatatat |
5971 |
T |
|
| Q |
336 |
tcaataatatatactttata |
355 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5970 |
tcaataatatatactttata |
5951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 31197366 - 31197410
Alignment:
| Q |
354 |
tatcttcaacctccctcttttcaccaccaccaaactcaataacac |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197366 |
tatcttcaacctccctcttttcaccaccaccaaactcaataacac |
31197410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 9004423 - 9004375
Alignment:
| Q |
81 |
caagataaaggtaattaatggtacctttatcttgagggggcgtaatgga |
129 |
Q |
| |
|
|||||| ||||| ||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
9004423 |
caagatgaaggtcattgatggtaccttcatcttgagggggcgtattgga |
9004375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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