View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_high_1 (Length: 822)
Name: NF13898_high_1
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 5332335 - 5332773
Alignment:
| Q |
9 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5332335 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5332434 |
T |
|
| Q |
109 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
5332435 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt |
5332534 |
T |
|
| Q |
209 |
nnnnngaagtttcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaattctctaagaaagctttaggaccacaattt |
308 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5332535 |
ttt--gaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaattt |
5332632 |
T |
|
| Q |
309 |
ccatgttgaccatgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca |
408 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332633 |
ccatagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca |
5332732 |
T |
|
| Q |
409 |
agctaaaaggaattaaacaataggtggaagaactttccttc |
449 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5332733 |
agctaaaaggaattaaacaataggtcgaagaactttccttc |
5332773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 5350054 - 5350492
Alignment:
| Q |
9 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5350054 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5350153 |
T |
|
| Q |
109 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
5350154 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt |
5350253 |
T |
|
| Q |
209 |
nnnnngaagtttcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaattctctaagaaagctttaggaccacaattt |
308 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5350254 |
ttt--gaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaattt |
5350351 |
T |
|
| Q |
309 |
ccatgttgaccatgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5350352 |
ccatagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca |
5350451 |
T |
|
| Q |
409 |
agctaaaaggaattaaacaataggtggaagaactttccttc |
449 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5350452 |
agctaaaaggaattaaacaataggtcgaagaactttccttc |
5350492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 507 - 805
Target Start/End: Original strand, 5332834 - 5333132
Alignment:
| Q |
507 |
taatctaagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
606 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332834 |
taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
5332933 |
T |
|
| Q |
607 |
ataagcaaaaacaatgttcaaaacatacaatcctannnnnnnnaaccaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332934 |
ataagcaaaaacaatgttcaaaacatacaatcctaattttttaaccaaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat |
5333033 |
T |
|
| Q |
707 |
tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333034 |
tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca |
5333132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 507 - 805
Target Start/End: Original strand, 5350553 - 5350851
Alignment:
| Q |
507 |
taatctaagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
606 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350553 |
taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
5350652 |
T |
|
| Q |
607 |
ataagcaaaaacaatgttcaaaacatacaatcctannnnnnnnaaccaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350653 |
ataagcaaaaacaatgttcaaaacatacaatcctaattttttaaccaaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat |
5350752 |
T |
|
| Q |
707 |
tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca |
805 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5350753 |
tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca |
5350851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 699
Target Start/End: Original strand, 5345783 - 5345818
Alignment:
| Q |
664 |
gttcttataataaaacaacaacacattttacaaaaa |
699 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5345783 |
gttcttataataacacaacaacacattttacaaaaa |
5345818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 278
Target Start/End: Complemental strand, 23585699 - 23585669
Alignment:
| Q |
248 |
caaactcagtgtcaatctaaacatacactaa |
278 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
23585699 |
caaactcagtgtcaatctaaacatacactaa |
23585669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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