View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_high_11 (Length: 379)
Name: NF13898_high_11
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 47241714 - 47242067
Alignment:
| Q |
8 |
ccaagaatatatttgtcagtcatgaaccacattcagtcattcactaagttattcacactgcatcagtcttcttcaaagtaataatttggtatctctggcg |
107 |
Q |
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| T |
47241714 |
ccaaaaatatatttgtcagtcatgaaccacattcagtcattcactaagttattcacactgcatcagtcttcttcaaagtaataatttggtatctctggcg |
47241813 |
T |
|
| Q |
108 |
agctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaattaactataacaaatgaaatgttaa |
207 |
Q |
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| T |
47241814 |
agctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaattaactataacaaatgaaatgttaa |
47241913 |
T |
|
| Q |
208 |
aagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaaggatgctgcccttcttgacaaatacaagtcatgtaaaatcataacaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47241914 |
aagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaaggatgctgcccttcttgacaaatacaagtcatgtaaaatcataacaca |
47242013 |
T |
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| Q |
308 |
ttcttccaattcagccgacttgtaacccaaacattcacatagggatgaagtctg |
361 |
Q |
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| T |
47242014 |
ttcttccaattcagccgacttgtaacccagacattcacatagggatgaagtctg |
47242067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 74 - 361
Target Start/End: Original strand, 47248229 - 47248516
Alignment:
| Q |
74 |
tcttcttcaaagtaataatttggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcat |
173 |
Q |
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| T |
47248229 |
tctttttcaaagtaatgatttggtatctctggcgatgaaggcaggtttgccacacattttaactgttccagaaaacgatttcaagtcaatgaacttgcaa |
47248328 |
T |
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| Q |
174 |
taataagaattaactataacaaatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaaggatgctgcccttc |
273 |
Q |
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| T |
47248329 |
taataagaaataactataacaaaagaattgtcaaaagttaaaacaatcaccttgttctgcttgtatttgtcacgaacagctttgaaggatcctgcctttc |
47248428 |
T |
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| Q |
274 |
ttgacaaatacaagtcatgtaaaatcataacacattcttccaattcagccgacttgtaacccaaacattcacatagggatgaagtctg |
361 |
Q |
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|||||| |||||| ||||||||||| |||||||| ||||| || | |||||| |||||||||| |||||||| ||||| | |||||| |
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| T |
47248429 |
ttgacatatacaaatcatgtaaaatgataacacaatcttctaaattagccgatgtgtaacccaagcattcacacagggaaggagtctg |
47248516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 345
Target Start/End: Original strand, 47253027 - 47253301
Alignment:
| Q |
74 |
tcttcttcaaagtaataatttggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcat |
173 |
Q |
| |
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|||||| ||||||||| ||||||||| ||||| || ||| ||||||||||||| |||||||||| || |||| | |||||||||| ||||||||| |
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| T |
47253027 |
tcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgcaa |
47253126 |
T |
|
| Q |
174 |
taataagaa-----------ttaactataacaaatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaagga |
262 |
Q |
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| T |
47253127 |
taataagaaccagctatatattaactataacaaag--------aaaggctaaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatga |
47253218 |
T |
|
| Q |
263 |
tgctgcccttcttgacaaatacaagtcatgtaaaatcataacacattcttccaattcagccgacttgtaacccaaacattcac |
345 |
Q |
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| T |
47253219 |
tgcagcccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgtaaaacaagcattcac |
47253301 |
T |
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