View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_high_15 (Length: 304)
Name: NF13898_high_15
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 5447303 - 5447004
Alignment:
| Q |
1 |
aattgggttagtcagatttgaatcaactagaggaaatcacacacaagatgtacaagcaagaggtaattgtgtcgtatatctgtatctatctcacaattcc |
100 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5447303 |
aattgggttattcagatttgactcaactagaggaaatcacacacaacattgacaagcaagaggtaattgtgtcgtatatctgtatctatctcacaattcc |
5447204 |
T |
|
| Q |
101 |
cttgccctccattaccttgttaattttatttgtatatgatcttagaaaaatctaaattcaaatattactgcttcgaagacgtaattgtgtcgtatatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5447203 |
cttgccctccattaccttgttaattttatttgtatatgatcttagacacatctaaattcaaatattactgcttcgaagacgtaattgtgtcgtatatgct |
5447104 |
T |
|
| Q |
201 |
gtgaacctttgttgttgtaaaatatagagaattatgaccacaattgtgattatgatgttgcagtatatgcttcacttcttatgatacatcagttagtata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
5447103 |
gtgaacctttgttgttgtaaaatatagagaattatgaccacaattgtgattatgatgttgcag--tatgcttcacttcttatgatacatcagttagtgta |
5447006 |
T |
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