View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_high_16 (Length: 275)
Name: NF13898_high_16
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_high_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 47241477 - 47241742
Alignment:
| Q |
10 |
attatacttcaaccatacaaatcataaacaataaaacaacactttaagtttcactaaccaatgtagtataccctatcaaagacaagaccccaaaagcata |
109 |
Q |
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| T |
47241477 |
attatacttcaaccatacaaatcataaacaataaaacaacactttaagtttcactaaccaatgtagtataccctatcaaagacaagaccccaaaagcata |
47241576 |
T |
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| Q |
110 |
ggttgtattaacaagtgacaacttgaacacaaaggaacttggtcattaagattatcataaaaaattagcaggcagtgactggaatatcatataattatgc |
209 |
Q |
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| T |
47241577 |
ggttgtattaacaagtgacaacttgaacacaaaggaacttggtcattaagattatcataaaaaattagcaggcagtgactggaatatcatataattatgc |
47241676 |
T |
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| Q |
210 |
ttgagctaattaagttgattgtcaaaccgcatagccaccaaaaatatatttgtcagtcatgaacca |
275 |
Q |
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| T |
47241677 |
ttgagctaattaagttgattgttaaaccgcatagccaccaaaaatatatttgtcagtcatgaacca |
47241742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 47246277 - 47246351
Alignment:
| Q |
83 |
tatcaaagacaagaccccaaaagcataggttgtattaacaagtgacaacttgaacacaaaggaacttggtcatta |
157 |
Q |
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| T |
47246277 |
tatcaaggacaagaccccaaaagcataggttgtattaacaagtgctaacttaagcacaaaggaacttggtcatta |
47246351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 47246169 - 47246246
Alignment:
| Q |
10 |
attatacttcaaccata--caaatcataaacaataaaacaacactttaagtttcactaaccaatgtagtataccctat |
85 |
Q |
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|||||||||| |||||| || |||||||||||| |||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
47246169 |
attatacttcgaccatatacatatcataaacaattaaacaacattataagttccactaaccaatgtagtataccctat |
47246246 |
T |
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