View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_high_22 (Length: 241)
Name: NF13898_high_22
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_high_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 6527350 - 6527572
Alignment:
| Q |
19 |
atcatagcctcaaatactagctttaaacattttgaaacaattaataatgaatatttttgcgacgaatcaaacccggtatcctgagatttacaacagacat |
118 |
Q |
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| T |
6527350 |
atcatagcctcaaatactagctttaaacattttgaaacaattaataatgaatatttttgcgacgaatcaaacccggtatcctgagatttacaacagtcat |
6527449 |
T |
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| Q |
119 |
acatcctgcctaccaacacttacgcaagacccatgtgggtaatgaatatttttgtatgagatttgatataattgtagggaaatcaattcaaattttcaaa |
218 |
Q |
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| T |
6527450 |
acatcctgcctaccaacacttacgcaagacccatgtgggtaatgaatatttttgtatgagatttgatataattgtagggaaatcaattcaaattttcaaa |
6527549 |
T |
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| Q |
219 |
taaatacaaatgagttaaaattt |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
6527550 |
taaatacaaatgagttaaaattt |
6527572 |
T |
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