View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13898_high_23 (Length: 237)

Name: NF13898_high_23
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13898_high_23
NF13898_high_23
[»] chr8 (1 HSPs)
chr8 (6-204)||(17627590-17627788)
[»] chr1 (5 HSPs)
chr1 (147-219)||(19468180-19468252)
chr1 (105-204)||(33160874-33160973)
chr1 (148-204)||(29658629-29658685)
chr1 (148-204)||(29691144-29691200)
chr1 (148-204)||(29718656-29718712)
[»] chr7 (3 HSPs)
chr7 (147-219)||(10169811-10169883)
chr7 (147-219)||(10177336-10177408)
chr7 (175-219)||(10167383-10167427)
[»] chr6 (7 HSPs)
chr6 (104-204)||(7993814-7993914)
chr6 (148-206)||(10579431-10579489)
chr6 (152-204)||(6602885-6602937)
chr6 (154-206)||(19632783-19632835)
chr6 (150-204)||(7131984-7132038)
chr6 (156-201)||(6410376-6410421)
chr6 (152-204)||(6403248-6403300)
[»] chr4 (5 HSPs)
chr4 (140-204)||(547283-547347)
chr4 (104-204)||(3438281-3438381)
chr4 (170-204)||(10634132-10634166)
chr4 (175-205)||(53761488-53761518)
chr4 (8-48)||(3438186-3438226)
[»] chr5 (1 HSPs)
chr5 (150-204)||(20477760-20477814)
[»] chr3 (1 HSPs)
chr3 (175-213)||(51764149-51764187)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 17627590 - 17627788
Alignment:
Q  6 tttgttatccaagtgtcagtctatccaacatttggatcttcaacgggtcgcatttttgaatgttcaccatgttgtagagttgtcttcatttcttgtcaat 105  Q
    ||||||||||| |||||| | |||||||||||||||||||||    |     |||||||||  ||| ||| || | |||||||||||||||||||  |||    
T  17627590 tttgttatccatgtgtcaatgtatccaacatttggatcttcagtatgcttattttttgaataatcaacatatttttgagttgtcttcatttcttggtaat 17627689  T
Q  106 ttggtgtcggtaaaccttaatcgttgtcggatggtc-acaatttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||||||| |||||||||| |  |||||||||| || || | | ||||||||||||||||| || | |||||||||||||||| |||||| |||||||||    
T  17627690 ttggtgtctgtaaaccttagttattgtcggatgctcgacgaat-cagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaa 17627788  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 19468180 - 19468252
Alignment:
Q  147 ttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaaaaaattgggtgtaag 219  Q
    |||| |||||||| ||||| || | || |||||||||||||||||||||||||||||||| |||||| |||||    
T  19468180 ttcaaccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaaaatattgggagtaag 19468252  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 33160973 - 33160874
Alignment:
Q  105 tttggtgtcggtaaaccttaatcgttgtcggatggtcacaatttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||||||||  ||||||||||| | ||| ||| | |||||   ||||| |||||||||||  ||  ||| ||||||||||||||||| ||||||||||||    
T  33160973 tttggtgtctataaaccttaatggatgttggaggctcacagaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaa 33160874  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 29658629 - 29658685
Alignment:
Q  148 tcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    ||||| |||||||| ||| ||  ||| ||||||||||||||||| ||||||||||||    
T  29658629 tcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29658685  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 29691144 - 29691200
Alignment:
Q  148 tcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    ||||| |||||||| ||| ||  ||| ||||||||||||||||| ||||||||||||    
T  29691144 tcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29691200  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 29718656 - 29718712
Alignment:
Q  148 tcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    ||||| |||||||| ||| ||  ||| ||||||||||||||||| ||||||||||||    
T  29718656 tcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29718712  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 10169811 - 10169883
Alignment:
Q  147 ttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaaaaaattgggtgtaag 219  Q
    |||| |||||||| ||||| || | || |||||||||||||||||||||||||||||||| || ||| |||||    
T  10169811 ttcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaaaatatagggagtaag 10169883  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 10177336 - 10177408
Alignment:
Q  147 ttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaaaaaattgggtgtaag 219  Q
    |||| |||||||| ||||| || | || |||||||||||||||||||||||||||||||| || ||| |||||    
T  10177336 ttcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaaaatatagggagtaag 10177408  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 10167383 - 10167427
Alignment:
Q  175 tgtccttcacttagtgagatcaaaatggaaaaaattgggtgtaag 219  Q
    |||||||||||||||||||||||||||||||| || ||| |||||    
T  10167383 tgtccttcacttagtgagatcaaaatggaaaatatagggagtaag 10167427  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 7993814 - 7993914
Alignment:
Q  104 atttggtgtcggtaaaccttaatcgttgtcggatggtcacaatttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatgga 203  Q
    ||||||||||  ||||||||| |   ||||||||| |||||   |||||||||||||||||| || |||| ||||| |||||| |||| |||||||||||    
T  7993814 atttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgga 7993913  T
Q  204 a 204  Q
    |    
T  7993914 a 7993914  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 10579431 - 10579489
Alignment:
Q  148 tcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaaaa 206  Q
    |||||||||||||| ||| |  |||| |||||||| |||||||||||||||||||||||    
T  10579431 tcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaaaa 10579489  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 6602885 - 6602937
Alignment:
Q  152 ccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||||||||||||  ||  ||| ||||||||||||||||||||||||||||||    
T  6602885 ccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatggaa 6602937  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 19632835 - 19632783
Alignment:
Q  154 ttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaaaa 206  Q
    |||||||| ||| || | || ||||||||||||||||||||||||||||||||    
T  19632835 ttgttttcgctcgttagtaattgtccttcacttagtgagatcaaaatggaaaa 19632783  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 7132038 - 7131984
Alignment:
Q  150 agccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||||||| ||||||| || |||| || ||||||||||||||| |||||||||||    
T  7132038 agccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 6410421 - 6410376
Alignment:
Q  156 gttttcactccttggaaaatgtccttcacttagtgagatcaaaatg 201  Q
    |||||||||| || |||| ||||||||||||| |||||||||||||    
T  6410421 gttttcactcgttagaaattgtccttcacttaatgagatcaaaatg 6410376  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 6403300 - 6403248
Alignment:
Q  152 ccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||||||||||||||||   || ||||||||||| ||||| ||||||||||||    
T  6403300 ccttgttttcactcctttcgaattgtccttcactcagtgaaatcaaaatggaa 6403248  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 547347 - 547283
Alignment:
Q  140 tcacaatttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||||| || |||||||||| ||||| || | || ||| ||||||||||||||||||||||||||    
T  547347 tcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 547283  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 3438281 - 3438381
Alignment:
Q  104 atttggtgtcggtaaaccttaatcgttgtcggatggtcacaatttcagccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatgga 203  Q
    ||||||||||  ||||||||| |  ||||  |||| ||||||  | |||||| ||||||||| || | || |||||||||||||||||||| ||||||||    
T  3438281 atttggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactcattagtaattgtccttcacttagtgagataaaaatgga 3438380  T
Q  204 a 204  Q
    |    
T  3438381 a 3438381  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 10634132 - 10634166
Alignment:
Q  170 gaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||| ||||||||||||||||||||||||||||||    
T  10634132 gaaactgtccttcacttagtgagatcaaaatggaa 10634166  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 53761488 - 53761518
Alignment:
Q  175 tgtccttcacttagtgagatcaaaatggaaa 205  Q
    |||||||||||||||||||||||||||||||    
T  53761488 tgtccttcacttagtgagatcaaaatggaaa 53761518  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 3438186 - 3438226
Alignment:
Q  8 tgttatccaagtgtcagtctatccaacatttggatcttcaa 48  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatcttcaa 3438226  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 20477760 - 20477814
Alignment:
Q  150 agccttgttttcactccttggaaaatgtccttcacttagtgagatcaaaatggaa 204  Q
    |||||||| ||||||  || |||| |||||||||||| |||||||||||||||||    
T  20477760 agccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 20477814  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 51764149 - 51764187
Alignment:
Q  175 tgtccttcacttagtgagatcaaaatggaaaaaattggg 213  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  51764149 tgtccttcacttggtgagatcaaaatggaaaacattggg 51764187  T

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