View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_high_3 (Length: 589)
Name: NF13898_high_3
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Original strand, 48230034 - 48230627
Alignment:
| Q |
19 |
attagataatgcaagcaaattctttttgggctctatataaacccttccacacccttcatctcttcacacatctcaaagttctcctttgttacatatagag |
118 |
Q |
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| T |
48230034 |
attagataatgcaagcaaattctttttgggctctatataaacccttccacacccttcatctcttcacacatctcaaagttctcctttgttacatatagag |
48230133 |
T |
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| Q |
119 |
gaaacaaggactaattaacttgttgtctcccccattaccaattatctcccataacattccagaaatgagggttaat------taagggtaagggtggtga |
212 |
Q |
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| T |
48230134 |
gaaacaaggactaattaacttgttgtctcccccattaccaattatctcccataacattccagaaatgagggttaattaagggtaagggtaagggtggtga |
48230233 |
T |
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| Q |
213 |
cagaagagagtgagcacacatggtgttttcttgcacgatgatgtttcatgcttgaagctatatgtgcttactctctatctgtcaccccaccaccannnnn |
312 |
Q |
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| T |
48230234 |
cagaagagagtgagcacacatggtgttttcttgcacgattatgtttcctgcttgaagctatatgtgcttactctctatctgtcaccccaccaccatctct |
48230333 |
T |
|
| Q |
313 |
nnnnnnnactcttgttcgttttatgttttcatacctatttctctgtagtttatgacactagtttcacttgcacaatccaccgaga--------------- |
397 |
Q |
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| T |
48230334 |
ctctctcactcttgttcgttttatgttttcatacctatttctctgtagtttatgacactagtttcacttgcacaatccaccgagattcaaaatataactt |
48230433 |
T |
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| Q |
398 |
ttcaaaagaaaattagttctttttatcgttttccactttttaatggttggactaaccctagatttcaacttgtgacttcat---tactttaaggcaataa |
494 |
Q |
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| T |
48230434 |
ttcaaaagaaaattagttctttttatcgttttccactttttaatggttggactaaccctagatttcaacttgtgacttcattactactttaaggcaataa |
48230533 |
T |
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| Q |
495 |
tgcttcatatgattcaaatctcattcatttatttcacaggtatgtgcttttttagattgtctatgttcctgtatatatataattgattcttctt |
588 |
Q |
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| T |
48230534 |
tgcttcatatgattcaaatctcattcatttatttcacaggtatgtgcttttttagattgtctatgttcctgtatatatataattgattcttctt |
48230627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 4043120 - 4043016
Alignment:
| Q |
200 |
gtaagggtggtgacagaagagagtgagcacacatggtgttttcttgcacgatgatgtttcatgcttgaagctatatgtgcttactctctatctgtcaccc |
299 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||| || |||||||||||| || |||||||| |||||| |||||||||||||||||| |
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| T |
4043120 |
gtaagggaggtgacagaagagagtgagcacacatggtactttcgtg---tatgatgtttcattctcgaagctatgtgtgctcactctctatctgtcaccc |
4043024 |
T |
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| Q |
300 |
caccacca |
307 |
Q |
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|| ||||| |
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| T |
4043023 |
catcacca |
4043016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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