View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13898_high_9 (Length: 407)

Name: NF13898_high_9
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13898_high_9
NF13898_high_9
[»] chr2 (3 HSPs)
chr2 (21-210)||(35974104-35974293)
chr2 (274-363)||(35973947-35974043)
chr2 (317-361)||(31026704-31026748)
[»] chr6 (3 HSPs)
chr6 (317-359)||(15443704-15443746)
chr6 (326-364)||(8931605-8931643)
chr6 (322-364)||(12627819-12627861)
[»] chr5 (1 HSPs)
chr5 (317-361)||(22423818-22423862)
[»] chr3 (2 HSPs)
chr3 (317-361)||(7614421-7614465)
chr3 (317-359)||(21419463-21419505)
[»] chr8 (1 HSPs)
chr8 (317-360)||(8798838-8798881)
[»] chr7 (3 HSPs)
chr7 (317-361)||(5835256-5835300)
chr7 (317-361)||(24146825-24146869)
chr7 (322-350)||(36813197-36813225)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 35974293 - 35974104
Alignment:
Q  21 aacctacatattctcgagctttgtcaacctcattagcacacgacgaagccggaaacgttgtcgttacgctaccatcatttctatttccagaaataccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35974293 aacctacatattctcgagctttgtcaacctcattagcacacgacgaagccggaaacgttgtcgttacgctaccatcatttctatttccagaaataccctc 35974194  T
Q  121 ccctgcgtgtgcagtatttttaggacacagaaagaagtttcttgatccaagtttcactagtttctcctctctattcaaacctacacatca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  35974193 ccctgcgtgtgcagtatttttaggacacagaaagaagtttcttgatccaagtttcactagtttctcctccctgttcaaacctacgcatca 35974104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 35974043 - 35973947
Alignment:
Q  274 ttctatgattataaactacgaagcacaaactcatataagg-------gaaaatagtttaagaaaataacataattcaatataattatatatgtcgat 363  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||||||||||    
T  35974043 ttctatgattataaactacgaagcacaaactcatataaggacgacacgaaaacggtttaagaaaataacataattcaatataattatatatgtcgat 35973947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 31026704 - 31026748
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgtcg 361  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||    
T  31026704 aataatttaagaaaatgacataattcaatgtaatcatatatgtcg 31026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 15443704 - 15443746
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgt 359  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  15443704 aataatttgagaaaataacataattcaatataattatatatgt 15443746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 8931643 - 8931605
Alignment:
Q  326 agaaaataacataattcaatataattatatatgtcgatg 364  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8931643 agaaaataacataattcagtataattatatgtgtcgatg 8931605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 12627861 - 12627819
Alignment:
Q  322 tttaagaaaataacataattcaatataattatatatgtcgatg 364  Q
    ||||||||||||||||| |||||| |||| |||||||||||||    
T  12627861 tttaagaaaataacatatttcaatgtaatcatatatgtcgatg 12627819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 22423862 - 22423818
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgtcg 361  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  22423862 aataatttgagaaaatcacataattcaatataattatatatgtcg 22423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 7614465 - 7614421
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgtcg 361  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||    
T  7614465 aataatttaagaaaatcacataattcagtataattatatatgtcg 7614421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 21419505 - 21419463
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgt 359  Q
    |||| ||||||||||||| |||||||||| |||||||||||||    
T  21419505 aataatttaagaaaataatataattcaatgtaattatatatgt 21419463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 8798881 - 8798838
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgtc 360  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||    
T  8798881 aataatttgagaaaataacataattcaatataattatatgtgtc 8798838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 5835256 - 5835300
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgtcg 361  Q
    |||||||| |||||||||||||||||| | ||||||||| |||||    
T  5835256 aatagtttgagaaaataacataattcagtgtaattatatgtgtcg 5835300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 24146825 - 24146869
Alignment:
Q  317 aatagtttaagaaaataacataattcaatataattatatatgtcg 361  Q
    |||| ||| ||||||| |||||||||||||||||||||| |||||    
T  24146825 aataattttagaaaatcacataattcaatataattatatgtgtcg 24146869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 36813225 - 36813197
Alignment:
Q  322 tttaagaaaataacataattcaatataat 350  Q
    |||||||||||||||||||||||||||||    
T  36813225 tttaagaaaataacataattcaatataat 36813197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University