View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13898_low_1 (Length: 822)

Name: NF13898_low_1
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13898_low_1
NF13898_low_1
[»] chr1 (5 HSPs)
chr1 (9-449)||(5332335-5332773)
chr1 (9-449)||(5350054-5350492)
chr1 (507-805)||(5332834-5333132)
chr1 (507-805)||(5350553-5350851)
chr1 (664-699)||(5345783-5345818)
[»] chr6 (1 HSPs)
chr6 (248-278)||(23585669-23585699)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 5332335 - 5332773
Alignment:
Q  9 aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                  
T  5332335 aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt 5332434  T
Q  109 nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn 208  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||         
T  5332435 tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt 5332534  T
Q  209 nnnnngaagtttcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaattctctaagaaagctttaggaccacaattt 308  Q
         |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5332535 ttt--gaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaattt 5332632  T
Q  309 ccatgttgaccatgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca 408  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332633 ccatagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca 5332732  T
Q  409 agctaaaaggaattaaacaataggtggaagaactttccttc 449  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5332733 agctaaaaggaattaaacaataggtcgaagaactttccttc 5332773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 5350054 - 5350492
Alignment:
Q  9 aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                  
T  5350054 aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt 5350153  T
Q  109 nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn 208  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||         
T  5350154 tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt 5350253  T
Q  209 nnnnngaagtttcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaattctctaagaaagctttaggaccacaattt 308  Q
         |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5350254 ttt--gaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaattt 5350351  T
Q  309 ccatgttgaccatgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca 408  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5350352 ccatagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatca 5350451  T
Q  409 agctaaaaggaattaaacaataggtggaagaactttccttc 449  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5350452 agctaaaaggaattaaacaataggtcgaagaactttccttc 5350492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 507 - 805
Target Start/End: Original strand, 5332834 - 5333132
Alignment:
Q  507 taatctaagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat 606  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332834 taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat 5332933  T
Q  607 ataagcaaaaacaatgttcaaaacatacaatcctannnnnnnnaaccaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat 706  Q
    |||||||||||||||||||||||||||||||||||        | | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332934 ataagcaaaaacaatgttcaaaacatacaatcctaattttttaaccaaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat 5333033  T
Q  707 tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333034 tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca 5333132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 507 - 805
Target Start/End: Original strand, 5350553 - 5350851
Alignment:
Q  507 taatctaagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat 606  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5350553 taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat 5350652  T
Q  607 ataagcaaaaacaatgttcaaaacatacaatcctannnnnnnnaaccaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat 706  Q
    |||||||||||||||||||||||||||||||||||        | | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5350653 ataagcaaaaacaatgttcaaaacatacaatcctaattttttaaccaaaaagaacttgttcttataataaaacaacaacacattttacaaaaagttccat 5350752  T
Q  707 tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5350753 tattgtaagggatactagaagatttacctggaaaccaagggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaaca 5350851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 699
Target Start/End: Original strand, 5345783 - 5345818
Alignment:
Q  664 gttcttataataaaacaacaacacattttacaaaaa 699  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5345783 gttcttataataacacaacaacacattttacaaaaa 5345818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 278
Target Start/End: Complemental strand, 23585699 - 23585669
Alignment:
Q  248 caaactcagtgtcaatctaaacatacactaa 278  Q
    |||||||||||||||||||||||||||||||    
T  23585699 caaactcagtgtcaatctaaacatacactaa 23585669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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