View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_13 (Length: 349)
Name: NF13898_low_13
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 162 - 332
Target Start/End: Complemental strand, 18366504 - 18366334
Alignment:
| Q |
162 |
ttactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatattttacaa |
261 |
Q |
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| T |
18366504 |
ttactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatcttttacaa |
18366405 |
T |
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| Q |
262 |
ctattctagttaaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatatt |
332 |
Q |
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| T |
18366404 |
ctattctagttaaatcagagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatatt |
18366334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 18366640 - 18366509
Alignment:
| Q |
1 |
ctaaatcattccattaaagacataatgaatatcaaag---------aattctactaaaaactcacttagaatattttccgtcaattgcatcaatgccata |
91 |
Q |
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| T |
18366640 |
ctaaatcattcaattaaagacataatgaatatcaaagtattctaagaattctactacaaactcacttagaatattttccgtcaattgcatcaatgccata |
18366541 |
T |
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| Q |
92 |
tattaaagagttaaagatatgaaaaacaataa |
123 |
Q |
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| T |
18366540 |
tattaaagagttaaagatatgaaaaataataa |
18366509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 22588267 - 22588441
Alignment:
| Q |
158 |
gctcttactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatatttt |
257 |
Q |
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| T |
22588267 |
gctcttactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactacatctttt |
22588366 |
T |
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| Q |
258 |
acaactattctagttaaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatatt |
332 |
Q |
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| T |
22588367 |
acaactattctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatatt |
22588441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 22588135 - 22588278
Alignment:
| Q |
1 |
ctaaatcattccattaaagacataatgaatatcaaag---------aattctactaaaaactcacttagaatattttccgtcaattgcatcaatgccata |
91 |
Q |
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| T |
22588135 |
ctaaatcattccattaaagacataatgaatatcaaagtattctaagaattctactacaaactcacttagaatattttccgtcatttgcatcaatgccata |
22588234 |
T |
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| Q |
92 |
tattaaagagttaaagatatgaaaaacaataaacacttactctt |
135 |
Q |
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| T |
22588235 |
tattaaagagttaaagatatgaaaaacaataagctcttactctt |
22588278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 15348031 - 15348091
Alignment:
| Q |
272 |
taaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatatt |
332 |
Q |
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| T |
15348031 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatatt |
15348091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 15437096 - 15437156
Alignment:
| Q |
272 |
taaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatatt |
332 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |
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| T |
15437096 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatatt |
15437156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 15528400 - 15528460
Alignment:
| Q |
272 |
taaatcaaagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatatt |
332 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |
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| T |
15528400 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatatt |
15528460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 19909865 - 19909831
Alignment:
| Q |
212 |
tatataattcaaaaatgttactagtgaaaaaataa |
246 |
Q |
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| T |
19909865 |
tatataattaaaaaatgttactagtgaaaaaataa |
19909831 |
T |
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