View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13898_low_2 (Length: 675)

Name: NF13898_low_2
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13898_low_2
NF13898_low_2
[»] chr2 (19 HSPs)
chr2 (24-658)||(33069150-33069791)
chr2 (307-656)||(33079408-33079757)
chr2 (263-658)||(33087848-33088243)
chr2 (263-654)||(33061429-33061820)
chr2 (263-658)||(33048315-33048710)
chr2 (461-658)||(33095542-33095739)
chr2 (25-87)||(42094295-42094357)
chr2 (26-93)||(6979084-6979150)
chr2 (25-84)||(16209471-16209530)
chr2 (119-173)||(18719723-18719775)
chr2 (94-173)||(42094273-42094351)
chr2 (24-87)||(44487245-44487308)
chr2 (124-167)||(45300363-45300406)
chr2 (94-164)||(1930669-1930739)
chr2 (29-87)||(9430230-9430288)
chr2 (25-87)||(12779486-12779547)
chr2 (25-87)||(25666891-25666953)
chr2 (119-183)||(1469719-1469783)
chr2 (95-163)||(42251163-42251231)
[»] chr4 (15 HSPs)
chr4 (264-658)||(18485441-18485835)
chr4 (25-87)||(21433966-21434028)
chr4 (119-173)||(21433863-21433917)
chr4 (102-173)||(1338423-1338492)
chr4 (101-173)||(16577243-16577315)
chr4 (29-93)||(21433861-21433925)
chr4 (29-87)||(31758677-31758733)
chr4 (51-132)||(34119650-34119728)
chr4 (28-87)||(52374904-52374963)
chr4 (25-87)||(7403176-7403238)
chr4 (94-172)||(33413994-33414072)
chr4 (94-187)||(15134541-15134636)
chr4 (133-186)||(16458028-16458083)
chr4 (94-170)||(45654081-45654157)
chr4 (119-163)||(52375012-52375056)
[»] chr8 (8 HSPs)
chr8 (25-93)||(27072902-27072970)
chr8 (119-173)||(40566551-40566605)
chr8 (24-87)||(20271106-20271169)
chr8 (24-87)||(21057734-21057797)
chr8 (24-87)||(40566549-40566612)
chr8 (119-186)||(2288694-2288763)
chr8 (94-164)||(40175964-40176034)
chr8 (51-87)||(34504387-34504423)
[»] chr1 (16 HSPs)
chr1 (24-87)||(21281460-21281524)
chr1 (102-167)||(31970116-31970181)
chr1 (24-87)||(7444374-7444437)
chr1 (25-87)||(34437690-34437752)
chr1 (119-189)||(49822623-49822695)
chr1 (51-87)||(16661825-16661861)
chr1 (95-163)||(34437598-34437666)
chr1 (25-84)||(7444265-7444324)
chr1 (94-173)||(34437667-34437746)
chr1 (94-173)||(38663641-38663720)
chr1 (25-87)||(939427-939489)
chr1 (25-86)||(40669023-40669082)
chr1 (119-189)||(40669024-40669094)
chr1 (124-173)||(15366491-15366540)
chr1 (51-88)||(31970130-31970167)
chr1 (124-164)||(2542701-2542741)
[»] scaffold0003 (1 HSPs)
scaffold0003 (119-172)||(136416-136469)
[»] chr6 (7 HSPs)
chr6 (119-188)||(17389992-17390063)
chr6 (119-192)||(28865485-28865559)
chr6 (94-173)||(1473605-1473684)
chr6 (25-84)||(31946914-31946973)
chr6 (24-93)||(12731537-12731606)
chr6 (124-173)||(12731654-12731703)
chr6 (124-185)||(24110039-24110102)
[»] chr7 (10 HSPs)
chr7 (103-170)||(49106984-49107051)
chr7 (94-184)||(12275808-12275900)
chr7 (102-188)||(2276254-2276338)
chr7 (24-87)||(5443513-5443576)
chr7 (24-87)||(5452558-5452621)
chr7 (119-173)||(5443624-5443678)
chr7 (119-173)||(5452669-5452723)
chr7 (28-93)||(3235546-3235611)
chr7 (46-87)||(3235652-3235693)
chr7 (26-86)||(31042124-31042184)
[»] chr3 (8 HSPs)
chr3 (24-87)||(36007448-36007511)
chr3 (46-88)||(3300728-3300770)
chr3 (119-186)||(35357292-35357361)
chr3 (97-164)||(3901566-3901633)
chr3 (24-87)||(26986276-26986339)
chr3 (94-140)||(19158682-19158728)
chr3 (51-87)||(3901509-3901545)
chr3 (123-163)||(19560728-19560768)
[»] chr5 (7 HSPs)
chr5 (51-87)||(28907378-28907414)
chr5 (51-87)||(28943773-28943809)
chr5 (119-191)||(42420112-42420186)
chr5 (94-163)||(3907724-3907793)
chr5 (54-87)||(3907747-3907780)
chr5 (102-186)||(3907631-3907715)
chr5 (25-93)||(22399754-22399822)
[»] scaffold0137 (1 HSPs)
scaffold0137 (95-164)||(8251-8320)


Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 24 - 658
Target Start/End: Original strand, 33069150 - 33069791
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc-----------------acccacataattt 106  Q
    ||||||||||||||| ||||| |||| |||||||||| | | ||||||||||||||||||||||||||||                 |||||||||||||    
T  33069150 ttagcaacacacattctatcacacacttttcaacacactttctttgatcggttaaaattcacattagacccaccaagtttatatgggacccacataattt 33069249  T
Q  107 agtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtggctagcatttctcataaatgtttagtatttacc 206  Q
    ||||||||| | ||||||||||||||||||||||||| | |||||||| |          |||||  |||||||||| |  |||||||||||||||||||    
T  33069250 agtgggacccaagtgatttttaaccaatcaaaaagagtgtgttgaaaatt----------atgtgacgctagcattttttttaaatgtttagtatttacc 33069339  T
Q  207 cgtttagctcatttctcttttgaaatatgtataagactaaggtcatgttgtttgcctaggttggtttaagtggtgcattggacacactctgcggacaagc 306  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33069340 cgtttagctcatttgtcttttgaaacatgtataagactaaggtcatgttgtttgcctaggttggtttaagtggtgcactggacacactctgcggacaagc 33069439  T
Q  307 atttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 406  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33069440 atttggtgcaaaagaatatcacatgttaggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 33069539  T
Q  407 acagaacacattctagtgctacttcatcaatcacaagacattgctagaacagctgcactctatatgaagtttcttataccaggattatttgcatatagca 506  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33069540 acagaacccattctagtgttacttcatcaatcacaagacattgctagaacagcagcactctatatgaagtttcttataccaggattatttgcatatagca 33069639  T
Q  507 tcttgagaaacatgttgaggtttctactaacacaatctgtagtgatgccactggttgtcttttcagctatcccagcaattgttcatgttggtattgcata 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33069640 tcttgagaaacatgttgaggtttctactaacacaatctgtagtgatgccactggttgtcttttcagctatcccagcaattgttcatgttggtattgcata 33069739  T
Q  607 tggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgcaact 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33069740 tggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgcaact 33069791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 307 - 656
Target Start/End: Original strand, 33079408 - 33079757
Alignment:
Q  307 atttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 406  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33079408 atttggtgcaaaagaatatcacatgttaggaatttatctacaaagctcttgcattatatcttttattttttccatcattatatcaattatttggttctat 33079507  T
Q  407 acagaacacattctagtgctacttcatcaatcacaagacattgctagaacagctgcactctatatgaagtttcttataccaggattatttgcatatagca 506  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||    
T  33079508 acagaacccattctagtgttacttcatcaatcacaagacattgctagaacagcagcactctatatgaagtttcttataccaggattatttgcatttggca 33079607  T
Q  507 tcttgagaaacatgttgaggtttctactaacacaatctgtagtgatgccactggttgtcttttcagctatcccagcaattgttcatgttggtattgcata 606  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||||    
T  33079608 ccttgagaaacatgttgaggtttctacaaacacaatctgtagtgatgccactggttattctttcagctataccagcaattgttcatgttggtattgcata 33079707  T
Q  607 tggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgcaa 656  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  33079708 tggatttgttcaatggtcgggtcttaaattcaaaggtggaccagttgcaa 33079757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 263 - 658
Target Start/End: Original strand, 33087848 - 33088243
Alignment:
Q  263 taggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcatta 362  Q
    |||||||| |||||||||||||| || |||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  33087848 taggttggcttaagtggtgcattagaaacactctgcggacaaggatttggcgcaaaagaatatcacaagttgggaatttacctacaaagctcttgcatta 33087947  T
Q  363 tatcttttattttttccatcattatatcaattatttggttctatacagaacacattctagtgctacttcatcaatcacaagacattgctagaacagctgc 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||    
T  33087948 tatcttttattttttccatcattatatcaattatttggttctatacagaacccattctagtgttacttcatcaatcacaagacattgctagaacagcagc 33088047  T
Q  463 actctatatgaagtttcttataccaggattatttgcatatagcatcttgagaaacatgttgaggtttctactaacacaatctgtagtgatgccactggtt 562  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||| || |||||||||    
T  33088048 actctatatgaagtttcttataccaggattatttgcatatagtatcttgcaaaacttgttgaggtttctacaaacacaatctgtagtaataccactggtt 33088147  T
Q  563 gtcttttcagctatcccagcaattgttcatgttggtattgcatatggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgcaact 658  Q
     |  |||||||||| |||||| | ||||||| ||| |||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||    
T  33088148 atactttcagctataccagcattggttcatggtgggattgcatatggatttgttcaatggacaagtctgaatttcaaaggtggaccagttgcaact 33088243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 263 - 654
Target Start/End: Original strand, 33061429 - 33061820
Alignment:
Q  263 taggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcatta 362  Q
    ||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33061429 taggttggtttaagtggtgcattagaaacactctgcggacaaggatttggcgcaaaagaatatcacatgttgggaatttatctacaaggctcttgcatta 33061528  T
Q  363 tatcttttattttttccatcattatatcaattatttggttctatacagaacacattctagtgctacttcatcaatcacaagacattgctagaacagctgc 462  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  33061529 tatctttcattttttcaatatttatatccattatttggttctatacagaacacattctagtgttacttcatcaatctcaagacattgctagaacagctgc 33061628  T
Q  463 actctatatgaagtttcttataccaggattatttgcatatagcatcttgagaaacatgttgaggtttctactaacacaatctgtagtgatgccactggtt 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  33061629 actctatatgaagtttcttataccaggattatttgcatatagcatcttgcaaaacttgttgaggtttctacaaacacaatctgtagtaatgccactggtt 33061728  T
Q  563 gtcttttcagctatcccagcaattgttcatgttggtattgcatatggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgc 654  Q
     || |||||||||||||| || |  |||||||||| |||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||    
T  33061729 atcctttcagctatcccaacactgattcatgttggaattgcatatggatttgttcaatggacaggtctgaatttcataggtggaccggttgc 33061820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 263 - 658
Target Start/End: Original strand, 33048315 - 33048710
Alignment:
Q  263 taggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcatta 362  Q
    ||||||||||||||||||||| | || |||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  33048315 taggttggtttaagtggtgcactagaaacactctgtggacaaggatttggtgcaaaggaatatcacatgttgggaatttatctacaaggctcttgcatta 33048414  T
Q  363 tatcttttattttttccatcattatatcaattatttggttctatacagaacacattctagtgctacttcatcaatcacaagacattgctagaacagctgc 462  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| ||    
T  33048415 tatctttcattttttcaatatttatatccattatttggttctatacagaacacattctagttttacttcatcaatctcaagacattgctagaacagcagc 33048514  T
Q  463 actctatatgaagtttcttataccaggattatttgcatatagcatcttgagaaacatgttgaggtttctactaacacaatctgtagtgatgccactggtt 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  33048515 actctatatgaagtttcttataccaggattatttgcatatagcatcttgcaaaacttgttgaggtttctacaaacacaatctgtagtaatgccactggtt 33048614  T
Q  563 gtcttttcagctatcccagcaattgttcatgttggtattgcatatggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgcaact 658  Q
     || |||||||||||||| || |  |||||||||| |||||||||||||||||||| ||| ||||| | | ||||| |||||||||||||||||||    
T  33048615 atcctttcagctatcccaacactgattcatgttggaattgcatatggatttgttcaatggacaggtttgagtttcataggtggaccagttgcaact 33048710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 461 - 658
Target Start/End: Original strand, 33095542 - 33095739
Alignment:
Q  461 gcactctatatgaagtttcttataccaggattatttgcatatagcatcttgagaaacatgttgaggtttctactaacacaatctgtagtgatgccactgg 560  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||| || |||||||    
T  33095542 gcactctatatgaagtttcttataccaggattatttgcatatagtatcttgcaaaacttgttgaggtttctacaaacacaatctgtagtaataccactgg 33095641  T
Q  561 ttgtcttttcagctatcccagcaattgttcatgttggtattgcatatggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgcaact 658  Q
    || |  |||||||||| |||||| | ||||||| ||| |||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||    
T  33095642 ttatactttcagctataccagcattggttcatggtgggattgcatatggatttgttcaatggacaagtctgaatttcaaaggtggaccagttgcaact 33095739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 42094357 - 42094295
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||||||||| || |||| ||||||||||  || |||||| |||||||||||||||    
T  42094357 tagcaacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacat 42094295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 6979150 - 6979084
Alignment:
Q  26 agcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 93  Q
    |||||||||||||||| || |||| |||||||||||| ||||| || |||||||||| ||||| ||||    
T  6979150 agcaacacacattttaacacacacttttcaacacatt-ttttttattggttaaaatttacattggacc 6979084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 16209530 - 16209471
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattca 84  Q
    |||||||||| ||| || ||||||| ||||||| |||||| ||||||| |||||||||||    
T  16209530 tagcaacacatattctaacatacacttttcaacgcattctctttgatcagttaaaattca 16209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 18719775 - 18719723
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||| |||||||||||||||||||| | ||||||||||  |||||||||||||||    
T  18719775 gtgaattttaaccaatcaaaaagagtgtgttgaaaaat--gtgttagaatgtgtg 18719723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 42094273 - 42094351
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||||||| |||| ||||||||| | ||| ||||||||||||||| || | | |||||||| ||||||||| ||||||||    
T  42094273 acccacatgatttggtgggaccatg-tgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtg 42094351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 44487308 - 44487245
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||| | |||||| || |||| ||| || ||| ||||||||||||||||||||||||||    
T  44487308 ttagcaacatatattttaccacacactttttaatacactctttttgatcggttaaaattcacat 44487245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 45300406 - 45300363
Alignment:
Q  124 ttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaa 167  Q
    |||||||||||||||| ||| | |||||||||||||||||||||    
T  45300406 ttttaaccaatcaaaaggagtgtgttgaaaaatgtgtgttagaa 45300363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 1930739 - 1930669
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtta 164  Q
    |||||||||||||  ||| ||  | |||| |||||||||||||||||||| |  |||||||||||||||||    
T  1930739 acccacataatttgatggaacatatgtgaattttaaccaatcaaaaagagtgtcttgaaaaatgtgtgtta 1930669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 9430288 - 9430230
Alignment:
Q  29 aacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||| || || |||| |||||||| ||||| |||||| |||||||||||||||    
T  9430288 aacacacattctaacacacacttttcaacatattctatttgattggttaaaattcacat 9430230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 12779486 - 12779547
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||| || || ||||||  ||||||||||||| ||||||| |||||||||||||||    
T  12779486 tagcaacacaccttctaacatacatttttcaacacattc-ttttgattggttaaaattcacat 12779547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 25666953 - 25666891
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||||||||| ||||||  |||||||||| ||| ||||||  |||||||| |||||    
T  25666953 tagcaacacacattttaacatacaattttcaacacactctctttgatgtgttaaaatccacat 25666891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 1469783 - 1469719
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtggctagcattt 183  Q
    |||| ||||||||||| ||| |||| | |||||||||| ||||||| ||||||| ||||| ||||    
T  1469783 gtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgtcgctagtattt 1469719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 42251231 - 42251163
Alignment:
Q  95 cccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtt 163  Q
    |||||||||||| |||||||| | | || |||||||| |||||| |||| | || ||||||||||||||    
T  42251231 cccacataatttggtgggacccatgcgaattttaaccgatcaaagagagtgtgtcgaaaaatgtgtgtt 42251163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 264 - 658
Target Start/End: Original strand, 18485441 - 18485835
Alignment:
Q  264 aggttggtttaagtggtgcattggacacactctgcggacaagcatttggtgcaaaagaatatcacatgttgggaatttatctacaaagctcttgcattat 363  Q
    ||||||||||| |||||||| | || |||||||  | ||| | ||||||||| || |||||||||||||||||||||||  ||||| |||| |||||| |    
T  18485441 aggttggtttaggtggtgcactagaaacactctatgaacagg-atttggtgccaaggaatatcacatgttgggaatttacttacaaggctcctgcatt-t 18485538  T
Q  364 atcttttattttttccat-cattatatcaattatttggttctatacagaacacattctagtgctacttcatcaatcacaagacattgctagaacagctgc 462  Q
    |||||| ||||||| ||| ||||||||||||||| |||||||||   |||    |||||||| ||||||  ||||| |||||||||||||||||| | ||    
T  18485539 atctttcatttttttcattcattatatcaattatatggttctattt-gaagt--ttctagtgttacttccccaatctcaagacattgctagaacaacagc 18485635  T
Q  463 actctatatgaagtttcttataccaggattatttgcatatagcatcttgagaaacatgttgaggtttctac-taacacaatctgtagtgatgccactggt 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||  || | |||||||||| ||||| |||||    
T  18485636 actctatatgaagtttcttataccaggattatttgcatatagcatcttgcaaaacatgttgagatttctacaaaagaaaatctgtagtaatgcctctggt 18485735  T
Q  562 tgtcttttcagctatcccagcaattgttcatgttgg---tattgcatatggatttgttcattggtcaggtcttaatttcaaaggtggaccagttgcaact 658  Q
    | || |||||||||||||| || |  ||||||||||   |||||| |||||||||||||| |||  |||| | ||||||| ||||||||||||| |||||    
T  18485736 tatcctttcagctatcccaacattgattcatgttggaattattgcctatggatttgttcaatggaaaggtttgaatttcataggtggaccagttacaact 18485835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 21434028 - 21433966
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||||||||| ||||||| |||||||||| |||  ||||| |||||||||||||||    
T  21434028 tagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacat 21433966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 21433917 - 21433863
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||| ||||||||||||||| |||| | |||||||||||||||||| ||||||||    
T  21433917 gtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtg 21433863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 1338492 - 1338423
Alignment:
Q  102 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    ||||| |||||| | | ||||||||||||||||||||  ||||| |||||||||||||||||| ||| ||||    
T  1338492 aatttggtgggatccatgtgatttttaaccaatcaaa--gagagtgttgaaaaatgtgtgttaaaatatgtg 1338423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 16577315 - 16577243
Alignment:
Q  101 taatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||||| |||||||| | || | ||||||| ||||||| |||  | |||||||||||||||||||||||||||    
T  16577315 taatttggtgggacctatgtaaattttaacaaatcaaacagaatgtgttgaaaaatgtgtgttagaatgtgtg 16577243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 21433861 - 21433925
Alignment:
Q  29 aacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 93  Q
    ||||||||||||| || |||  |||||||||| ||| |||||| ||||||||||||||| |||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacc 21433925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 31758677 - 31758733
Alignment:
Q  29 aacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||||| ||  ||| |||||||||||||| |||||| |||||||||||||||    
T  31758677 aacacacattttaaca--cacttttcaacacattctatttgattggttaaaattcacat 31758733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 34119650 - 34119728
Alignment:
Q  51 tttcaacacattctttttgatcggttaaaattcacattagaccacccacataatttagtgggaccaaggtgatttttaacca 132  Q
    |||||||||| || ||||||||||||||||||||||| ||   | |||||| ||||||| ||||| | |||| |||||||||    
T  34119650 tttcaacacactcgttttgatcggttaaaattcacatgag---atccacatgatttagtaggacccatgtgaattttaacca 34119728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 52374904 - 52374963
Alignment:
Q  28 caacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||| || |||| |||||||||| ||| |||||| | |||||||||||||    
T  52374904 caacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacat 52374963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 7403238 - 7403176
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||| |||||| || ||||  ||||||||| ||| |||||| |||||||||||||||    
T  7403238 tagcaacacatattttaacacacactattcaacacactctctttgattggttaaaattcacat 7403176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 33414072 - 33413994
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgt 172  Q
    |||||| | |||| |||||| | | |||| ||||||||||||||| |||| | |||||||| ||||||||| |||||||    
T  33414072 acccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttacaatgtgt 33413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 15134636 - 15134541
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaa--tgtgtggctagcatttctca 187  Q
    ||||| || ||||||| ||||| | |||| ||||||||||| ||| |||  | |||||||||||||||||| ||  |||||  |||||||||||||    
T  15134636 acccaaatgatttagtcggacccatgtgaattttaaccaataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgttactagcatttctca 15134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 16458028 - 16458083
Alignment:
Q  133 atcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 186  Q
    |||||| |||| | |||||||| ||||||||||||||||||  |||||||||||||    
T  16458028 atcaaagagagtgtgttgaaaagtgtgtgttagaatgtgtgttgctagcatttctc 16458083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 45654081 - 45654157
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgt 170  Q
    |||||||| ||||  ||||| | | |||| ||||||||||||||||| || | ||| |||||| |||||||||||||    
T  45654081 acccacatgatttgatgggatccatgtgaattttaaccaatcaaaaaaagtgtgttaaaaaatatgtgttagaatgt 45654157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 52375012 - 52375056
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtt 163  Q
    |||| |||||||||||||||||||| |  ||||||||||||||||    
T  52375012 gtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgtt 52375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 27072970 - 27072902
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 93  Q
    |||||||||| |||||| || |||| ||||||||||||||||||||| |||||||||| ||||| ||||    
T  27072970 tagcaacacatattttaacacacacttttcaacacattctttttgattggttaaaatttacattggacc 27072902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 40566551 - 40566605
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||| |||||||||||||||||||| | |||||||||| ||||||| ||||||||    
T  40566551 gtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgtg 40566605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 20271169 - 20271106
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||||||| ||  ||| |||||||||| ||| ||||||  ||||||||||||||    
T  20271169 ttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacat 20271106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 21057797 - 21057734
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||||||| ||  ||| |||||||||| ||| ||||||  ||||||||||||||    
T  21057797 ttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacat 21057734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 40566612 - 40566549
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||||||| || | |  |||||||||  |||||||||| |||||||||||||||    
T  40566612 ttagcaacacacattttaacacatatttttcaacacgctctttttgattggttaaaattcacat 40566549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 2288694 - 2288763
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 186  Q
    |||| ||||||||||||||| |||||  |||||||| ||| | ||||||||||||  |||||||||||||    
T  2288694 gtgaattttaaccaatcaaagagagattgttgaaaagtgtcttttagaatgtgtgttgctagcatttctc 2288763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 40175964 - 40176034
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtta 164  Q
    ||||||||||||| |||||||| | |||| ||||||||||| |||| ||| | ||| |||| |||||||||    
T  40175964 acccacataatttggtgggacccatgtgaattttaaccaattaaaaggagtgtgttaaaaagtgtgtgtta 40176034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 34504387 - 34504423
Alignment:
Q  51 tttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||| |||||||||| |||||||||||||||    
T  34504387 tttcaacacactctttttgattggttaaaattcacat 34504423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 21281460 - 21281524
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattc-tttttgatcggttaaaattcacat 87  Q
    ||||||||||| |||||| ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  21281460 ttagcaacacatattttaacatacacttttcaacacattcttttttgattggttaaaattcacat 21281524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 31970181 - 31970116
Alignment:
Q  102 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaa 167  Q
    ||||| |||||  ||| |||| |||||||||||||||||||| | |||||||||||||||||||||    
T  31970181 aatttggtgggttcaatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttagaa 31970116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 7444437 - 7444374
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||||||| || || |||| |||||||||||||| ||||||  ||||||||||||||    
T  7444437 ttagcaacacacattctaacaaacacttttcaacacattctctttgatgagttaaaattcacat 7444374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 34437752 - 34437690
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||||||||| ||  ||| |||||||||| ||| |||||| |||||||||||||||    
T  34437752 tagcaacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacat 34437690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 49822623 - 49822695
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttaga--atgtgtggctagcatttctcata 189  Q
    |||| ||||||||||||||| |||| | |||||||||||||||||| |  |||||| ||||||||| ||||||    
T  49822623 gtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttataatatgtgttgctagcattcctcata 49822695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 16661825 - 16661861
Alignment:
Q  51 tttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16661825 tttcaacacattctctttgatcggttaaaattcacat 16661861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 34437666 - 34437598
Alignment:
Q  95 cccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtt 163  Q
    ||||||| |||| |||||||| | |||| ||||||||||||||| ||||   |||||||||||||||||    
T  34437666 cccacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 7444265 - 7444324
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattca 84  Q
    ||||||||||||||||| || |||  |||||||||||| | ||| |||||||||||||||    
T  7444265 tagcaacacacattttaacacacatttttcaacacattttctttaatcggttaaaattca 7444324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 34437667 - 34437746
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    ||||| ||||||| | |||||| | |||| ||||||||||||||| |||| | |||||||| || |||||| ||||||||    
T  34437667 acccatataatttggggggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtg 34437746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 38663720 - 38663641
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    ||||| || |||| |||||||| | |||| || |||||||||||| |||| | |||||||||| ||||||| ||||||||    
T  38663720 acccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtg 38663641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 939489 - 939427
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||| |||||||||| |||||  ||||||||||||| | |||||| |||||||||| ||||    
T  939489 tagcaagacacattttaacatacgtatttcaacacattatctttgattggttaaaatttacat 939427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 40669082 - 40669023
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcaca 86  Q
    ||||||||||||||||| ||  ||| |||||||||| ||| |||||| ||||||||||||||    
T  40669082 tagcaacacacattttaaca--cacttttcaacacactctctttgattggttaaaattcaca 40669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 40669024 - 40669094
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcata 189  Q
    |||| ||||||||||||||| |||| | ||||||||  |||||||| ||||||||  ||||||||||||||||    
T  40669024 gtgaattttaaccaatcaaagagagtgtgttgaaaa--gtgtgttaaaatgtgtgttgctagcatttctcata 40669094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 15366540 - 15366491
Alignment:
Q  124 ttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||||||||||||||||||| | |||| ||| ||||| ||||||||||||    
T  15366540 ttttaaccaatcaaaaagagtgtgttggaaagtgtgtcttagaatgtgtg 15366491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 31970130 - 31970167
Alignment:
Q  51 tttcaacacattctttttgatcggttaaaattcacatt 88  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  31970130 tttcaacacactctttttgattggttaaaattcacatt 31970167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 2542741 - 2542701
Alignment:
Q  124 ttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtta 164  Q
    ||||||||||||||| |||| | ||||||||||||||||||    
T  2542741 ttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 2542701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 136416 - 136469
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgt 172  Q
    |||| |||||||||||||||||||| | |||||||||||||||||| |||||||    
T  136416 gtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgtgt 136469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 17389992 - 17390063
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcat 188  Q
    |||| ||||||||||||||| |||||| |||||||| || |||||| ||||||||  |||||||||||||||    
T  17389992 gtgaattttaaccaatcaaagagagagtgttgaaaattgcgtgttaaaatgtgtgttgctagcatttctcat 17390063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 28865485 - 28865559
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcataaat 192  Q
    |||| ||||||||||||||| |||| | |||||||| || |||||| ||||||||  |||||||||||||||||||    
T  28865485 gtgagttttaaccaatcaaagagagcgtgttgaaaa-tgcgtgttacaatgtgtgttgctagcatttctcataaat 28865559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 1473684 - 1473605
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||||||| |||| |||| ||| | |||| ||||||||||||||| | || | |||||||||||||| ||| ||||||||    
T  1473684 acccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtg 1473605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 31946973 - 31946914
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattca 84  Q
    |||||||||||||| || || |||| ||||||||||  |||||| |||||||||||||||    
T  31946973 tagcaacacacattctaacacacacttttcaacacacacttttttatcggttaaaattca 31946914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 12731537 - 12731606
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 93  Q
    ||||||||||| ||| ||  | |||| | |||||||||||| |||||| ||||||||||||||| |||||    
T  12731537 ttagcaacacatattctaatacacacttctcaacacattctctttgattggttaaaattcacatgagacc 12731606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 12731654 - 12731703
Alignment:
Q  124 ttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||||||||||||||||||| | |||| ||||||||||||| ||| ||||    
T  12731654 ttttaaccaatcaaaaagagtgtgttggaaaatgtgtgttataatatgtg 12731703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 24110102 - 24110039
Alignment:
Q  124 ttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttaga--atgtgtggctagcatttct 185  Q
    ||||||||||||||| |||| | |||||||||||| | |||||  |||||| ||||||||||||    
T  24110102 ttttaaccaatcaaagagagtgtgttgaaaaatgtattttagaatatgtgttgctagcatttct 24110039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 49106984 - 49107051
Alignment:
Q  103 atttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgt 170  Q
    |||| |||||||| | |||| ||||||||||||||| |||| | |||||||| |||||||||||||||    
T  49106984 atttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttagaatgt 49107051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 12275808 - 12275900
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttc 184  Q
    |||||||| |||| |||||||| |  ||| |||||||||||| || |||| | |||| ||| ||||||||||||||||||  |||||||||||    
T  12275808 acccacatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgttagaatgtgtgttgctagcatttc 12275900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 2276338 - 2276254
Alignment:
Q  102 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtggctagcatttctcat 188  Q
    ||||| |||||| | | |||| ||||||||||||||| |||| | |||||||| ||||||||||  ||||| |||| ||||||||||    
T  2276338 aatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttag--tgtgttgctaacatttctcat 2276254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 5443513 - 5443576
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||| ||||| || || |||| |||||||||||||| ||||| |||||| |||||||||    
T  5443513 ttagcaacatacattctaacacacacttttcaacacattctgtttgaccggttagaattcacat 5443576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 5452558 - 5452621
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||| ||||| || || |||| |||||||||||||| ||||| |||||| |||||||||    
T  5452558 ttagcaacatacattctaacacacacttttcaacacattctgtttgaccggttagaattcacat 5452621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 5443624 - 5443678
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||| ||||||||||||||| | ||   |||||||||||||||||||||||||||    
T  5443624 gtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtg 5443678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 5452669 - 5452723
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg 173  Q
    |||| ||||||||||||||| | ||   |||||||||||||||||||||||||||    
T  5452669 gtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtg 5452723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 3235546 - 3235611
Alignment:
Q  28 caacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 93  Q
    |||||||||||||| || |||| || ||| ||| ||| |||||| ||||||||||||||| |||||    
T  3235546 caacacacattttaacacacactttccaatacactctctttgattggttaaaattcacatgagacc 3235611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 3235693 - 3235652
Alignment:
Q  46 acacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||| ||||||| |||||||||| |||||||||||||||    
T  3235693 acacattccaacacactctttttgattggttaaaattcacat 3235652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 31042124 - 31042184
Alignment:
Q  26 agcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcaca 86  Q
    ||||||||| |||||| || |||| |||||| ||||| | |||||| ||||||||||||||    
T  31042124 agcaacacatattttaacacacacttttcaatacattatctttgattggttaaaattcaca 31042184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 36007511 - 36007448
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||||||| ||| ||| |||||||||||| | |||||  |||||||||||||||    
T  36007511 ttagcaacacacattttaacattcacttttcaacacattttctttgagtggttaaaattcacat 36007448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 3300728 - 3300770
Alignment:
Q  46 acacatttcaacacattctttttgatcggttaaaattcacatt 88  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  3300728 acacattttaacacattctctttgatcggttaaaattcacatt 3300770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 35357361 - 35357292
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 186  Q
    |||| ||||||||||||||| |||| | |||||||||| | ||||||||||||||  |||||||||||||    
T  35357361 gtgagttttaaccaatcaaagagagtgtgttgaaaaatatttgttagaatgtgtgttgctagcatttctc 35357292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 3901566 - 3901633
Alignment:
Q  97 cacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtta 164  Q
    ||||| |||| |||||||| | |||| ||||||||||||||| |||| | |||||||| |||||||||    
T  3901566 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 3901633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 26986276 - 26986339
Alignment:
Q  24 ttagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacat 87  Q
    ||||||||||| |||||| |||| || ||||||||||||||  |||||  ||||||||||||||    
T  26986276 ttagcaacacatattttaacatatacttttcaacacattctccttgattagttaaaattcacat 26986339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 19158728 - 19158682
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaa 140  Q
    |||||||||||||||||||||  | |||| |||||||||||||||||    
T  19158728 acccacataatttagtgggactcatgtgaattttaaccaatcaaaaa 19158682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 3901509 - 3901545
Alignment:
Q  51 tttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||| |||||| |||||||||||||||    
T  3901509 tttcaacacattctctttgattggttaaaattcacat 3901545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 19560728 - 19560768
Alignment:
Q  123 tttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtt 163  Q
    |||||||||||||||| |||| | |||||||||||||||||    
T  19560728 tttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 19560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 28907378 - 28907414
Alignment:
Q  51 tttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28907378 tttcaacacattctctttgatcggttaaaattcacat 28907414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 28943773 - 28943809
Alignment:
Q  51 tttcaacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28943773 tttcaacacattctctttgatcggttaaaattcacat 28943809  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 42420112 - 42420186
Alignment:
Q  119 gtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctcataaa 191  Q
    |||| ||||||||||||||| |||| | ||||||||  |||| ||||||||||||  |||| |||||||||||||    
T  42420112 gtgagttttaaccaatcaaatagagtgtgttgaaaagcgtgttttagaatgtgtgttgctaacatttctcataaa 42420186  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 3907724 - 3907793
Alignment:
Q  94 acccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtt 163  Q
    |||||||| |||| |||||||| | |||| |||||||||||||||||||  | |||| |||| |||||||    
T  3907724 acccacatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttggaaaaagtgtgtt 3907793  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 3907780 - 3907747
Alignment:
Q  54 caacacattctttttgatcggttaaaattcacat 87  Q
    |||||||||||||||||| |||||||||||||||    
T  3907780 caacacattctttttgattggttaaaattcacat 3907747  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 3907715 - 3907631
Alignment:
Q  102 aatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgttagaatgtgtg--gctagcatttctc 186  Q
    ||||| ||||| || | |||| |||||||||||||||  ||| | |||||||| ||| ||||||||||||||  |||||||||||||    
T  3907715 aatttggtgggtcccatgtgaattttaaccaatcaaa--gagtgtgttgaaaagtgtttgttagaatgtgtgttgctagcatttctc 3907631  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 22399754 - 22399822
Alignment:
Q  25 tagcaacacacattttatcatacacatttcaacacattctttttgatcggttaaaattcacattagacc 93  Q
    |||||||||||||| ||  |  ||| |||||||||| |||||||||| || |||||||||||| |||||    
T  22399754 tagcaacacacattctaatactcacttttcaacacactctttttgattggataaaattcacatgagacc 22399822  T

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Target: scaffold0137 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 8251 - 8320
Alignment:
Q  95 cccacataatttagtgggaccaaggtgatttttaaccaatcaaaaagagagcgttgaaaaatgtgtgtta 164  Q
    |||||||||||| ||||||   | |||| ||||| |||||||||||||  |||||||||| |||||||||    
T  8251 cccacataatttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgtta 8320  T

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