View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_20 (Length: 263)
Name: NF13898_low_20
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_20 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 16572737 - 16572964
Alignment:
| Q |
17 |
aggagtgtgatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgt |
116 |
Q |
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|||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16572737 |
aggaatgtgatgaatgacgagcataatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgt |
16572836 |
T |
|
| Q |
117 |
tcgagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttca |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16572837 |
tcgagttgactgagaaattatccatccttgctaagagtaatgaaagagctacagaagtatgattaggaagtgtcagttggattgcactgccgctccttca |
16572936 |
T |
|
| Q |
217 |
ggtggcaggcgtgaagacatgtcctatt |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
16572937 |
ggtggcaggcgtgaagacatgtcctatt |
16572964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 16874619 - 16874845
Alignment:
| Q |
17 |
aggagtgtgatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgt |
116 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16874619 |
aggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcaggctttggcgt |
16874718 |
T |
|
| Q |
117 |
tcgagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttca |
216 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |
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| T |
16874719 |
tcgaattgactgagaaattatccatccttgctaagagtaatgaaagagctacagaagcatggttaggaagtgtcggttggattgcactgccgctcctaca |
16874818 |
T |
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| Q |
217 |
ggtggcaggcgtgaagacatgtcctatt |
244 |
Q |
| |
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|||||||||||||||||| ||||||||| |
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| T |
16874819 |
ggtggcaggcgtgaagac-tgtcctatt |
16874845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 16580758 - 16580980
Alignment:
| Q |
17 |
aggagtgtgatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgt |
116 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16580758 |
aggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgt |
16580857 |
T |
|
| Q |
117 |
tcgagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttca |
216 |
Q |
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|||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| |||||||| |
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| T |
16580858 |
tcgagttgaccgagaaattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttca |
16580957 |
T |
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| Q |
217 |
ggtggcaggcgtgaagacatgtc |
239 |
Q |
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| ||| ||||||||||||||||| |
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| T |
16580958 |
gatggtaggcgtgaagacatgtc |
16580980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 16614622 - 16614400
Alignment:
| Q |
17 |
aggagtgtgatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgt |
116 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16614622 |
aggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgt |
16614523 |
T |
|
| Q |
117 |
tcgagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttca |
216 |
Q |
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|||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| |||||||| |
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| T |
16614522 |
tcgagttgaccgagaaattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttca |
16614423 |
T |
|
| Q |
217 |
ggtggcaggcgtgaagacatgtc |
239 |
Q |
| |
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| ||| ||||||||||||||||| |
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| T |
16614422 |
gatggtaggcgtgaagacatgtc |
16614400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 21629507 - 21629732
Alignment:
| Q |
19 |
gagtgtgatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc |
118 |
Q |
| |
|
||||||||||||| ||||| |||||| | |||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||| ||||||||| |
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| T |
21629507 |
gagtgtgatgaatggcgagcttcatgctggctgggatcaaccatctgggtgcattgtattccgaaatgttgaacactcaagggtgcaggccttggcgttc |
21629606 |
T |
|
| Q |
119 |
gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtg-tcagttggattgcactgccgctccttcag |
217 |
Q |
| |
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||||||||| | ||| |||| |||||||||||||||||||||||||||||| ||| | ||| ||| || || |||||||| || | ||||| |||||| |
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| T |
21629607 |
gagttgactaataaa-tatctatccttgcaaagagtaatgaaagagctacataagcaaggtcaggcgatgatcggttggattacaataccgctgcttcag |
21629705 |
T |
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| Q |
218 |
gtggcaggcgtgaagacatgtcctatt |
244 |
Q |
| |
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|||||| || | ||||||||||||||| |
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| T |
21629706 |
gtggcatgcatcaagacatgtcctatt |
21629732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 233427 - 233279
Alignment:
| Q |
35 |
gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat |
134 |
Q |
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|||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||| |
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| T |
233427 |
gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat |
233328 |
T |
|
| Q |
135 |
tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg |
183 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
233327 |
tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg |
233279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 7392068 - 7392216
Alignment:
| Q |
35 |
gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat |
134 |
Q |
| |
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|||| ||||||||| |||||||| ||| ||||||||||| | |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||| |
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| T |
7392068 |
gagcttcatgcaagctgggatcaaccaactgggtgcattattttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat |
7392167 |
T |
|
| Q |
135 |
tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg |
183 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
7392168 |
tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg |
7392216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 48298543 - 48298405
Alignment:
| Q |
35 |
gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat |
134 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||| |
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| T |
48298543 |
gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaat |
48298444 |
T |
|
| Q |
135 |
tatccatccttgcaaagagtaatgaaagagctacagaag |
173 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| |||||| |
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| T |
48298443 |
tatctatccttgcagagagtaatgaaagagcttcagaag |
48298405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 10939 - 10841
Alignment:
| Q |
50 |
tgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgca |
148 |
Q |
| |
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||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
10939 |
tgggaccaaccatctggatgcattgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgagaaattatctatccttgca |
10841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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