View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_21 (Length: 245)
Name: NF13898_low_21
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_21 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31507977 - 31507733
Alignment:
| Q |
1 |
aactttctaatgagttcacttagccaaaattgtcacttgctatttccggtcaatttgcataggtagaagtttttggggatcaaagcaaatacaagctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31507977 |
aactttctaatgagttcacttagccaaaattgtcacttgctatttccggtcaatttgcataggtagaagtttttggggatcaaagcaaatacaagctctt |
31507878 |
T |
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| Q |
101 |
ctctttgtgataagcttagagtacactttgctctcaacttattttaaaacattcacctcctttccctgatataactatatattgcattttatcctttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31507877 |
ctctttgtgataagcttagagtacactttgctctcaacttattttaaaacattcacctcctttccctgatataactatatattgcattttatcctttttt |
31507778 |
T |
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| Q |
201 |
aacttgaatgaaccttctgttcatattttcctttctccacatctt |
245 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
31507777 |
aacttgaatgaaccttttgtccatattttcctttctccacatctt |
31507733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 8465807 - 8465992
Alignment:
| Q |
49 |
gtcaatttgcataggtagaagtttttggggatcaaagcaaatacaagctcttctctt-tgtgataagcttagagtacactttgctctcaacttattttaa |
147 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8465807 |
gtcactttgcataggtagaagtttt-ggggatcaaagcaaatacaagctctcctcttgtgtgataagcttagagtacactttgctctcaacttattttaa |
8465905 |
T |
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| Q |
148 |
aacattcacctcctttccctgatataactatatattgcattttatccttttttaacttgaatgaaccttctgttcatattttccttt |
234 |
Q |
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| T |
8465906 |
aacattcacgtattttccctgatataactatatattgcattttatcctattttaacttgaatgaaccttctgtccatattttccttt |
8465992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 34561462 - 34561235
Alignment:
| Q |
1 |
aactttctaatgagttcacttagccaaaattgtcacttgctatttccggtcaatttgcataggtagaagtttttggggatcaaagcaa----at------ |
90 |
Q |
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||||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
34561462 |
aacttcctaatgagttcaattggccaaaattgtcacttgctatttcgggtcaatttgcataggttgaagtttt-ggggatcaaagcaatacaattacacc |
34561364 |
T |
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| Q |
91 |
--acaagctcttctcttt-gtgataagcttagagtacactttgctctcaacttattttaaaacattcacctcctttccctgatataactatatattgcat |
187 |
Q |
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||||||||| |||||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
34561363 |
taacaagctctcctcttttgtgataagcttagattgcactttgctctcatcttattttaaaacattcaccccctttccctgagataagtatatattgcat |
34561264 |
T |
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| Q |
188 |
tttatccttttttaacttgaatgaacctt |
216 |
Q |
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| T |
34561263 |
tttatcttgtttccacttgaacgaacctt |
34561235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8465776 - 8465813
Alignment:
| Q |
1 |
aactttctaatgagttcacttagccaaaattgtcactt |
38 |
Q |
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| T |
8465776 |
aactttctaatgagttcacttagccaaaattgtcactt |
8465813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 44415951 - 44415712
Alignment:
| Q |
1 |
aactttctaatgagttcacttagccaaaattgtcacttgctatttccggtcaatttgcataggtagaagtttttggggatcaaagcaaatacaagctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
44415951 |
aactttctaatgagttcacttagccaaaattgtcgcttgctatttccggtcaatttgcataggtagaag-ttttggggatcaaagcaaacacaagctctc |
44415853 |
T |
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| Q |
101 |
ctctt-tgtgataagcttagagtacactttgctctcaacttattttaaaacattcacctcctttccctgatataactatatattgcattttatccttttt |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |
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| T |
44415852 |
ctcttgtgtgataagcttagagtacactttgctctcaacttattttaaaacattcacctcctttccatgatat-actatatattgcattttatcctattt |
44415754 |
T |
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| Q |
200 |
taacttgaatgaaccttctgttcatattttcctttctccaca |
241 |
Q |
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| T |
44415753 |
taacttgaatgaaccttctgtccatattttcctttctccaca |
44415712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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