View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_26 (Length: 233)
Name: NF13898_low_26
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_26 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 17456528 - 17456302
Alignment:
| Q |
7 |
catatcacatcaagaaatattagcatcaagttattggtttctccctccaaatagcccttctttcccaatggatatggtctattgtatggaaaaatccatc |
106 |
Q |
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| T |
17456528 |
catatcacatcaagaaatattagcatcaagttattggtttctccctccaaatagcccttctttcccaatggatatggtctattgtatggaaaaatccatc |
17456429 |
T |
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| Q |
107 |
actctttattatccaaaaatcgggtttaatagggccactttggtcatagtttgcttggaaaaaggaccataaatgaccccaatacaccgaacacgacaca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
17456428 |
actctttattatccaaaaatcgggtttaatagggccactttggtcatagtttgcttggaaaaaggaccagaaatgaccccaatacaccgaacatgacaca |
17456329 |
T |
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| Q |
207 |
atttcgttaccagaaacatgccattca |
233 |
Q |
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| T |
17456328 |
atttcgttaccagaaacatgccattca |
17456302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 15200919 - 15200694
Alignment:
| Q |
8 |
atatcacatcaagaaatattagcatcaagttattggtttctccctccaaatagcccttctttcccaatggatatggtctattgtatggaaaaatccatca |
107 |
Q |
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|||| |||| |||||||||||||||||| |||||||||| | |||||||||||||||||| ||||| ||||||||||| | |||||||||||| |||||| |
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| T |
15200919 |
atattacatgaagaaatattagcatcaaattattggtttattcctccaaatagcccttctatcccagtggatatggtcaactgtatggaaaaaaccatca |
15200820 |
T |
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| Q |
108 |
ctctttattatccaaaaatcgggtttaatagggccactttggtcatagtttgcttggaaaaaggaccataaatgaccccaatacaccgaacacgacacaa |
207 |
Q |
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| T |
15200819 |
atctttattatccaaaaatcgggtacaatagtgccaaattggtcatagttcgcttggaaaaaggactctaaatgaccccaatgcaccgaacatgacacaa |
15200720 |
T |
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| Q |
208 |
tttcgttaccagaaacatgccattca |
233 |
Q |
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| T |
15200719 |
tgtcgttataggaaagatgccattca |
15200694 |
T |
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