View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_28 (Length: 227)
Name: NF13898_low_28
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_28 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 5447536 - 5447300
Alignment:
| Q |
7 |
tgaaccatcaagtaagttttatgtgtgcgattcttgtttcaagttcactacttttcagaaccttaattgcacttgtggaaaaccaacaaacagacaacct |
106 |
Q |
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| T |
5447536 |
tgaaccatcaagtaagttttatgtgtgcgattcttgtttcaagttcactacttttcagaaccttgattgcacttgtggaaaaccaacaaacagacaacct |
5447437 |
T |
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| Q |
107 |
cgtgatt---------------tggatgctcaaaatcaggcctttcttagagaaaatggttcaacttttttagtgtttgacgatttgaagattgtgc-aa |
190 |
Q |
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| T |
5447436 |
cgtaatttggattctaagcgtgtggatgctcaaaatcaggcctttcttagagaaaatggttcaacttttttagtgttcgacgatttgaagattgtgcaaa |
5447337 |
T |
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| Q |
191 |
gttcggctatgactacattaagcctgttgaaggaatt |
227 |
Q |
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| T |
5447336 |
gttcggctatgactaccttaagcctgttgaaggaatt |
5447300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 5508664 - 5508747
Alignment:
| Q |
7 |
tgaaccatcaagtaagttttatgtgtgcgattcttgtttcaagttcactacttttcagaaccttaattgcacttgtggaaaacc |
90 |
Q |
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| T |
5508664 |
tgaaccatcaagtaagttttatgtgtgtgattcttgtaacaagtttactacttttcgaaacctcgactgcacctgtggaaaacc |
5508747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 5437304 - 5437225
Alignment:
| Q |
11 |
ccatcaagtaagttttatgtgtgcgattcttgtttcaagttcactacttttcagaaccttaattgcacttgtggaaaacc |
90 |
Q |
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| T |
5437304 |
ccatcaagtaagttttttgtgtgtgattcttgtaacacgtttactactttccaaaaccttcattgtacctgtggaaaacc |
5437225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 5999288 - 5999212
Alignment:
| Q |
14 |
tcaagtaagttttatgtgtgcgattcttgtttcaagttcactacttttcagaaccttaattgcacttgtggaaaacc |
90 |
Q |
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| T |
5999288 |
tcaagtaagatttttgtgtgtgatgcttgtaacaagtttacaacttttcagaatcttgattgtacttgtggaaaacc |
5999212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 5629840 - 5629926
Alignment:
| Q |
7 |
tgaaccatcaagtaagttttatgtgtgcgattcttgtttcaagttcactacttttcagaaccttaattgcacttgtggaaaaccaac |
93 |
Q |
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| T |
5629840 |
tgaatcatcaagtaagttttttgtgtgtgatacttgcaacaagtttacaactttacagaatcttgattgtacttgtgaaaaaccaac |
5629926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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