View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_5 (Length: 572)
Name: NF13898_low_5
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_5 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 6145577 - 6145038
Alignment:
| Q |
1 |
taaattctattggctattggcagctataacttcattgagtgtgttagtgtttgtgctctttgctcaaaggtatacttataagaatgtgcaaaataatgtt |
100 |
Q |
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| T |
6145577 |
taaattctattggctattggcagctataactacattgagtgtgtttgtgtttgtgctctttgctcaaaggtatacttataagaatgtgcaaaataatgtt |
6145478 |
T |
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| Q |
101 |
gtggctgattgttatgatggaaagtgtgatgatggtggagcagggagaatggtgtgaattagttcttaattttacattgattaaattctaaaatttcatc |
200 |
Q |
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| T |
6145477 |
gtggctgattgttatgatggaaagtgtgatgatggtggagcagggagaatggtgtgaattagttcttaattttacattgattaaattctaaaatttcatc |
6145378 |
T |
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| Q |
201 |
taatgatggctggaatactatatatgtttgcatgtagtaaagttgtataatgtgtaaaattggtttttaattctgtgttagttactttgctttgaactga |
300 |
Q |
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| T |
6145377 |
taatgatggctggaatactatatatgtttgcatgtagtaaagttgtataatatgtaaatttggtttttaattgtgtgttagttactttgctttgaactga |
6145278 |
T |
|
| Q |
301 |
tttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaagaaaat |
400 |
Q |
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| T |
6145277 |
tttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaagaaaat |
6145178 |
T |
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| Q |
401 |
tatgagtattttcaatgc-aaaagtaccacattctcttaatttttgtactaacatagtaacataccaatcttgtactgcggtgcccatgaaaagagtata |
499 |
Q |
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| T |
6145177 |
tatgagtattttcaatgcaaaaagtaccacattctcttaattt----------------acataccaatcttgtactgcggtgcccatgaaaatagtata |
6145094 |
T |
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| Q |
500 |
agttgacaaaacgtaacatacggggaaagtccttgttctcctttctcgacaatagtt |
556 |
Q |
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| T |
6145093 |
agttgacaaaacgtaacattcgggg-aagtccttgttctcctttctcgacaatagtt |
6145038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 482 - 549
Target Start/End: Complemental strand, 11596 - 11529
Alignment:
| Q |
482 |
gcccatgaaaagagtataagttgacaaaacgtaacatacggggaaagtccttgttctcctttctcgac |
549 |
Q |
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| T |
11596 |
gcccatgaaaatagtatatgttgacaaaacgtaacattaggggaaagtccttgttgtcctttctcgac |
11529 |
T |
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