View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_6 (Length: 560)
Name: NF13898_low_6
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 163 - 560
Target Start/End: Original strand, 17820230 - 17820615
Alignment:
| Q |
163 |
aagatggatctattagtctcccacatgttcctctcctagctgcgactttaatgctgattaatcaattaatcaatgtcttccacatggaatttctcttatt |
262 |
Q |
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| T |
17820230 |
aagatggctctattagtctcccacttgttcctctcctagctgccactttaatgcaaattaatcaattaatcaatgtcttccacttggaatttctcttatt |
17820329 |
T |
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| Q |
263 |
tgtattaaattctacaaaatataannnnnnnnnggtctatataaggatgattatgtaaacaaatatcatagtgagcaaccactagtagctacttatcact |
362 |
Q |
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| T |
17820330 |
tgtataaaattctacaaaat------------tggtctatataaggatgattatgtaaacaaatatcatagtgagcaaccactagtagctacttatcact |
17820417 |
T |
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| Q |
363 |
atggctaatcaacaatctttgctagacaagcctagaaaattccttcccaaaacattttggttaatcctctctttagttgctatcataagctcatcagccc |
462 |
Q |
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| T |
17820418 |
atggctaatcaacaatctttgctagacaagcctagaaaatcccttccaaaaacattttggttaatcctctctttagttgctatcataatctcatcagccc |
17820517 |
T |
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| Q |
463 |
taatttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgtttactgtgagcatgctgttgatacaaaatcttgctta |
560 |
Q |
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| T |
17820518 |
taatttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgtttactgtgaacatgctgttgatacaaaatcttgctta |
17820615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 356 - 493
Target Start/End: Original strand, 17775947 - 17776084
Alignment:
| Q |
356 |
tatcactatggctaatcaacaatctttgctagacaagcctagaaaattccttcccaaaacattttggttaatcctctctttagttgctatcataagctca |
455 |
Q |
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| T |
17775947 |
tatcagtatggctatccaacaatctttgctagacaagccaagaaaatccattccaaaaacattttggttagtcctctctttagttgctatcataagttca |
17776046 |
T |
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| Q |
456 |
tcagccctaatttctactcatctcaagaaaccaatctc |
493 |
Q |
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| T |
17776047 |
tcagcccttattatttctcatctaaataaacctatctc |
17776084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 379 - 493
Target Start/End: Original strand, 17806662 - 17806776
Alignment:
| Q |
379 |
ctttgctagacaagcctagaaaattccttcccaaaacattttggttaatcctctctttagttgctatcataagctcatcagccctaatttctactcatct |
478 |
Q |
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| T |
17806662 |
ctttgctacacaagcctagaaaatccattcccaaaacattttggttagttctctctttagctgctatcataagctcatcagcccttattatttctcatct |
17806761 |
T |
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| Q |
479 |
caagaaaccaatctc |
493 |
Q |
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| T |
17806762 |
gaacaaacccatctc |
17806776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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