View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13898_low_7 (Length: 493)

Name: NF13898_low_7
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13898_low_7
NF13898_low_7
[»] chr2 (4 HSPs)
chr2 (21-474)||(31645668-31646122)
chr2 (69-111)||(3044185-3044227)
chr2 (67-111)||(10166461-10166505)
chr2 (62-106)||(23480920-23480964)
[»] chr1 (6 HSPs)
chr1 (30-178)||(36016666-36016819)
chr1 (69-111)||(20505490-20505532)
chr1 (69-111)||(26676744-26676786)
chr1 (69-112)||(28756690-28756733)
chr1 (72-137)||(2884052-2884117)
chr1 (67-112)||(42966902-42966947)
[»] chr8 (4 HSPs)
chr8 (30-176)||(30998497-30998649)
chr8 (69-111)||(9932309-9932351)
chr8 (69-111)||(25582794-25582836)
chr8 (72-126)||(27529558-27529612)
[»] chr5 (3 HSPs)
chr5 (69-111)||(26369148-26369190)
chr5 (62-126)||(15259086-15259150)
chr5 (62-106)||(35101388-35101432)
[»] chr4 (3 HSPs)
chr4 (69-111)||(40850659-40850701)
chr4 (69-111)||(47590668-47590710)
chr4 (69-111)||(56024890-56024932)
[»] chr3 (3 HSPs)
chr3 (69-111)||(10436644-10436686)
chr3 (69-112)||(15029926-15029969)
chr3 (33-106)||(22649500-22649573)
[»] chr7 (2 HSPs)
chr7 (69-111)||(8123973-8124015)
chr7 (69-111)||(40858233-40858275)
[»] chr6 (3 HSPs)
chr6 (69-111)||(6029175-6029217)
chr6 (66-111)||(18972823-18972868)
chr6 (69-106)||(30987220-30987257)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 474
Target Start/End: Original strand, 31645668 - 31646122
Alignment:
Q  21 aattatcgtgtgtttcatcaacaagaggactctttacaaactctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatt 120  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||    
T  31645668 aattatcgtgtgttttgtcaacaagaggactctttacaaactctttttgataaaattaagcttcaattttattggtggccgaaagcgaatcagattaatt 31645767  T
Q  121 tggcttctacttatcaca-----tggtttaatcctttagtttgtttgtaaatcattttgtaatcgaggggctttaaacttttttgatttcgcatttcctt 215  Q
    ||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31645768 tggcttctacttatcacacgtggtggtttaatcctttagtttgtttgtgaatcattttgtaatcgaggcgctttaaacttttttgatttcgcatttcctt 31645867  T
Q  216 tagtatttgatgttatttattacttgctttgtagggttttcaacactccttatactgttctagaattcctaagtttttgagtcaatata--ttttatttt 313  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||      |||||||||||||||||||||||||||  |||||||||    
T  31645868 tggtatttgatgttatttattacttgctttgtagggttttcagcactctttatgct------gaattcctaagtttttgagtcaatatattttttatttt 31645961  T
Q  314 aacttcttnnnnnnnntatatccacaatttgtttcatcgggttaaggtgtccttttaataaaggtgttgaataagatgacc--tagtgaagtgaaactac 411  Q
    ||||||||        ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  31645962 aacttctt--aaaaaatataaacacaatttgtttcattgggttaaggtgtccttttaataaaggtgttgaataagatgacctatagtgaagtgaaactac 31646059  T
Q  412 ctggctcctacaaagtctgcgttacctttgtagtctaaatatgttgttagtatggtatatatg 474  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31646060 ctggcttctacaaagtccgcgttacctttgtagtctaaatatgttgttagtatggtatatatg 31646122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 3044185 - 3044227
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  3044185 gataaagttaagcttcaatcttactggtggctgaaagctaatc 3044227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 10166461 - 10166505
Alignment:
Q  67 ttgataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||    
T  10166461 ttgataaaattaagttgcaatcttattggtggctaaaagcaaatc 10166505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 23480920 - 23480964
Alignment:
Q  62 tctttttgataaaattaagcttcaatcttattggtggctgaaagc 106  Q
    |||| |||| |||||||||||||||||||||| |||||| |||||    
T  23480920 tcttcttgacaaaattaagcttcaatcttattagtggctaaaagc 23480964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 36016666 - 36016819
Alignment:
Q  30 gtgtttcatcaacaagaggactctttacaaactctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggcttcta 129  Q
    ||||||| | || |||||| ||||||||||| | || | || ||||| |||||||||||||| |||||||||||||| |||| ||||||||  |||| ||    
T  36016666 gtgtttcctaaaaaagaggcctctttacaaagttttctcgacaaaatcaagcttcaatcttaatggtggctgaaagcaaatcggattaattctgctttta 36016765  T
Q  130 cttatcaca-----tggtttaatcctttagtttgtttgtaaatcattttgtaat 178  Q
    |||||||||     |||||||||||||||  |||||||  ||||||||||||||    
T  36016766 cttatcacatgtagtggtttaatcctttaacttgtttgagaatcattttgtaat 36016819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 20505490 - 20505532
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  20505490 gataaagttaagcttcaatcttactggtggctgaaagctaatc 20505532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 26676744 - 26676786
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  26676744 gataaagttaagcttcaatcttactggtggctgaaagctaatc 26676786  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 28756733 - 28756690
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatca 112  Q
    |||||| |||||||||||||||| |||||||||||||| |||||    
T  28756733 gataaagttaagcttcaatcttactggtggctgaaagcaaatca 28756690  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 2884052 - 2884117
Alignment:
Q  72 aaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggcttctacttatcac 137  Q
    |||||||||||||||| ||| ||||||||||||||  || | |||||||| |||| ||| ||||||    
T  2884052 aaaattaagcttcaatattactggtggctgaaagcgcataaaattaatttagcttttacctatcac 2884117  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 42966947 - 42966902
Alignment:
Q  67 ttgataaaattaagcttcaatcttattggtggctgaaagctaatca 112  Q
    |||||||||||||||||||||||||||  ||||| ||||| |||||    
T  42966947 ttgataaaattaagcttcaatcttattaatggctaaaagcaaatca 42966902  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 30998649 - 30998497
Alignment:
Q  30 gtgtttcatcaacaagaggactcttt-acaaactctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggcttct 128  Q
    |||||||||||| |||||  |||||| ||||| |||| |||| ||||||||| ||||||| ||||| || |||||||| |||| | ||||||| |||| |    
T  30998649 gtgtttcatcaaaaagagacctcttttacaaattcttcttgacaaaattaagtttcaatcatattgatgtctgaaagcgaatcggcttaattttgctttt 30998550  T
Q  129 acttatcacatg-----gtttaatcctttagtttgtttgtaaatcattttgta 176  Q
    ||||||||||||     | |||| ||||||| ||| |||| ||||||||||||    
T  30998549 acttatcacatgtggtagcttaaccctttagcttgcttgtgaatcattttgta 30998497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 9932351 - 9932309
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  9932351 gataaagttaagcttcaatcttactggtggctgaaagctaatc 9932309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 25582836 - 25582794
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  25582836 gataaagttaagcttcaatcttactggtggctgaaagctaatc 25582794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 27529558 - 27529612
Alignment:
Q  72 aaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggctt 126  Q
    ||||||||| ||||||| || |||||||||||||| |||||||| ||||| ||||    
T  27529558 aaaattaagtttcaatcatagtggtggctgaaagcaaatcagatcaattttgctt 27529612  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 26369190 - 26369148
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  26369190 gataaagttaagcttcaatcttactggtggctgaaagctaatc 26369148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 15259150 - 15259086
Alignment:
Q  62 tctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggctt 126  Q
    |||| |||| |||||||||||||||||||  || ||| ||||||| ||||| |||||||| ||||    
T  15259150 tcttcttgagaaaattaagcttcaatctttgtgatggttgaaagcaaatcatattaattttgctt 15259086  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 35101432 - 35101388
Alignment:
Q  62 tctttttgataaaattaagcttcaatcttattggtggctgaaagc 106  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||||    
T  35101432 tcttcttgacaaaattaagcttcaatcttattgatggttgaaagc 35101388  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 40850659 - 40850701
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  40850659 gataaagttaagcttcaatcttactggtggctgaaagctaatc 40850701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 47590710 - 47590668
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  47590710 gataaagttaagcttcaatcttattggtggctgaaagcaaatc 47590668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 56024890 - 56024932
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  56024890 gataaagttaagcttcaatcttactggtggctgaaagcaaatc 56024932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 10436686 - 10436644
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  10436686 gataaagttaagcttcaatcttactggtggctgaaagctaatc 10436644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 15029926 - 15029969
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatca 112  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||    
T  15029926 gataaagttaagcttcaatcttattggtggttgaaagcgaatca 15029969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 22649500 - 22649573
Alignment:
Q  33 tttcatcaacaagaggactctttacaaactctttttgataaaattaagcttcaatcttattggtggctgaaagc 106  Q
    |||| ||||||||||  ||| |||||||  ||  |||| ||||||||||||||| ||| |||||||||||||||    
T  22649500 tttcgtcaacaagagtcctcgttacaaaaactacttgacaaaattaagcttcaaactttttggtggctgaaagc 22649573  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 8123973 - 8124015
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| |||||| ||||||||||||    
T  8123973 gataaagttaagcttcaatcttactggtggttgaaagctaatc 8124015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 40858275 - 40858233
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||| || ||||||||||||||||    
T  40858275 gataaagttaagcttcaatcttactgatggctgaaagctaatc 40858233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 6029175 - 6029217
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    |||||| |||||||||||||||||| |||||||||||| ||||    
T  6029175 gataaagttaagcttcaatcttattagtggctgaaagcgaatc 6029217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 18972868 - 18972823
Alignment:
Q  66 tttgataaaattaagcttcaatcttattggtggctgaaagctaatc 111  Q
    ||||||||| |||||||||||||||| | |||||||||||| ||||    
T  18972868 tttgataaagttaagcttcaatcttactcgtggctgaaagcaaatc 18972823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 30987257 - 30987220
Alignment:
Q  69 gataaaattaagcttcaatcttattggtggctgaaagc 106  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  30987257 gataaaattaaacttcaatcatattggtggctgaaagc 30987220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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